vfb-connect
v1.2.15
General Documentation
API Reference
VFB_connect output formats
VFB Semantic queries
Tutorials
VFB_connect Quickstart Guide
Discovery
Finding single cell transcriptomics data for a given cell type
Connectomics
Complete Documentation
vfb_connect package
neo package
owl package
vfb-connect
Index
Edit on GitHub
Index
B
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C
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D
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E
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G
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L
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M
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N
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O
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Q
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R
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S
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T
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V
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X
B
batch_query() (in module vfb_connect.neo.query_wrapper)
,
[1]
C
chunks() (in module vfb_connect.neo.neo4j_tools)
,
[1]
cli_credentials() (in module vfb_connect.neo.neo4j_tools)
,
[1]
cli_neofj_connect() (in module vfb_connect.neo.neo4j_tools)
,
[1]
commit_csv() (vfb_connect.neo.neo4j_tools.Neo4jConnect method)
,
[1]
commit_list() (in module vfb_connect.neo.neo4j_tools.Neo4jConnect)
(vfb_connect.neo.neo4j_tools.Neo4jConnect method)
,
[1]
commit_list_in_chunks() (in module vfb_connect.neo.neo4j_tools.Neo4jConnect)
(vfb_connect.neo.neo4j_tools.Neo4jConnect method)
,
[1]
D
dequote() (in module vfb_connect.cross_server_tools)
dict_cursor() (in module vfb_connect.neo.neo4j_tools)
,
[1]
E
escape_string() (in module vfb_connect.neo.neo4j_tools)
,
[1]
G
gen_short_form() (in module vfb_connect.cross_server_tools)
(in module vfb_connect.owl.owlery_query_tools)
,
[1]
gen_simple_report() (in module vfb_connect.neo.query_wrapper)
,
[1]
get_anatomical_individual_TermInfo() (in module vfb_connect.neo.query_wrapper.QueryWrapper)
(vfb_connect.neo.query_wrapper.QueryWrapper method)
,
[1]
get_connected_neurons_by_type() (in module vfb_connect.cross_server_tools.VfbConnect)
(vfb_connect.cross_server_tools.VfbConnect method)
get_DataSet_TermInfo() (in module vfb_connect.neo.query_wrapper.QueryWrapper)
(vfb_connect.neo.query_wrapper.QueryWrapper method)
,
[1]
get_datasets() (in module vfb_connect.neo.query_wrapper.QueryWrapper)
(vfb_connect.neo.query_wrapper.QueryWrapper method)
,
[1]
get_dbs() (in module vfb_connect.neo.query_wrapper.QueryWrapper)
(vfb_connect.neo.query_wrapper.QueryWrapper method)
,
[1]
get_default_servers() (in module vfb_connect.default_servers)
get_gene_function_filters() (in module vfb_connect.cross_server_tools.VfbConnect)
(vfb_connect.cross_server_tools.VfbConnect method)
get_images() (in module vfb_connect.neo.query_wrapper.QueryWrapper)
(vfb_connect.neo.query_wrapper.QueryWrapper method)
,
[1]
get_images_by_filename() (vfb_connect.neo.query_wrapper.QueryWrapper method)
,
[1]
get_images_by_type() (in module vfb_connect.cross_server_tools.VfbConnect)
(vfb_connect.cross_server_tools.VfbConnect method)
get_instances() (in module vfb_connect.cross_server_tools.VfbConnect)
(in module vfb_connect.owl.owlery_query_tools.OWLeryConnect)
(vfb_connect.cross_server_tools.VfbConnect method)
(vfb_connect.owl.owlery_query_tools.OWLeryConnect method)
,
[1]
get_instances_by_dataset() (in module vfb_connect.cross_server_tools.VfbConnect)
(vfb_connect.cross_server_tools.VfbConnect method)
get_lookup() (vfb_connect.neo.neo4j_tools.Neo4jConnect method)
,
[1]
get_neurons_downstream_of() (in module vfb_connect.cross_server_tools.VfbConnect)
(vfb_connect.cross_server_tools.VfbConnect method)
get_neurons_upstream_of() (in module vfb_connect.cross_server_tools.VfbConnect)
(vfb_connect.cross_server_tools.VfbConnect method)
get_similar_neurons() (in module vfb_connect.cross_server_tools.VfbConnect)
(vfb_connect.cross_server_tools.VfbConnect method)
get_subclasses() (in module vfb_connect.cross_server_tools.VfbConnect)
(in module vfb_connect.owl.owlery_query_tools.OWLeryConnect)
(vfb_connect.cross_server_tools.VfbConnect method)
(vfb_connect.owl.owlery_query_tools.OWLeryConnect method)
,
[1]
get_superclasses() (in module vfb_connect.cross_server_tools.VfbConnect)
(in module vfb_connect.owl.owlery_query_tools.OWLeryConnect)
(vfb_connect.cross_server_tools.VfbConnect method)
(vfb_connect.owl.owlery_query_tools.OWLeryConnect method)
,
[1]
get_template_TermInfo() (in module vfb_connect.neo.query_wrapper.QueryWrapper)
(vfb_connect.neo.query_wrapper.QueryWrapper method)
,
[1]
get_templates() (in module vfb_connect.neo.query_wrapper.QueryWrapper)
(vfb_connect.neo.query_wrapper.QueryWrapper method)
,
[1]
get_TermInfo() (in module vfb_connect.neo.query_wrapper.QueryWrapper)
(vfb_connect.neo.query_wrapper.QueryWrapper method)
,
[1]
get_terms_by_region() (in module vfb_connect.cross_server_tools.VfbConnect)
(vfb_connect.cross_server_tools.VfbConnect method)
get_terms_by_xref() (in module vfb_connect.neo.query_wrapper.QueryWrapper)
(vfb_connect.neo.query_wrapper.QueryWrapper method)
,
[1]
get_transcriptomic_profile() (in module vfb_connect.cross_server_tools.VfbConnect)
(vfb_connect.cross_server_tools.VfbConnect method)
get_type_TermInfo() (in module vfb_connect.neo.query_wrapper.QueryWrapper)
(vfb_connect.neo.query_wrapper.QueryWrapper method)
,
[1]
get_vfb_link() (vfb_connect.cross_server_tools.VfbConnect method)
L
labels_2_ids() (vfb_connect.owl.owlery_query_tools.OWLeryConnect method)
,
[1]
list_all_edge_props() (vfb_connect.neo.neo4j_tools.Neo4jConnect method)
,
[1]
list_all_node_props() (vfb_connect.neo.neo4j_tools.Neo4jConnect method)
,
[1]
lookup_id() (vfb_connect.cross_server_tools.VfbConnect method)
M
module
vfb_connect
vfb_connect.cross_server_tools
vfb_connect.default_servers
vfb_connect.neo
,
[1]
vfb_connect.neo.neo4j_tools
,
[1]
vfb_connect.neo.query_wrapper
,
[1]
vfb_connect.neo.test
vfb_connect.neo.test.neo_tools_tests
vfb_connect.owl
vfb_connect.owl.owlery_query_tools
,
[1]
N
Neo4jConnect (class in vfb_connect.neo.neo4j_tools)
,
[1]
Neo4jConnectTest (class in vfb_connect.neo.test.neo_tools_tests)
NeoQueryWrapperTest (class in vfb_connect.neo.test.neo_tools_tests)
O
OWLeryConnect (class in vfb_connect.owl.owlery_query_tools)
,
[1]
Q
query() (vfb_connect.owl.owlery_query_tools.OWLeryConnect method)
,
[1]
QueryWrapper (class in vfb_connect.neo.query_wrapper)
,
[1]
R
rest_return_check() (vfb_connect.neo.neo4j_tools.Neo4jConnect method)
,
[1]
S
setUp() (vfb_connect.neo.test.neo_tools_tests.Neo4jConnectTest method)
(vfb_connect.neo.test.neo_tools_tests.NeoQueryWrapperTest method)
T
test_connection() (vfb_connect.neo.neo4j_tools.Neo4jConnect method)
,
[1]
test_get_anatomical_individual_TermInfo() (vfb_connect.neo.test.neo_tools_tests.NeoQueryWrapperTest method)
test_get_DataSet_TermInfo() (vfb_connect.neo.test.neo_tools_tests.NeoQueryWrapperTest method)
test_get_datasets() (vfb_connect.neo.test.neo_tools_tests.NeoQueryWrapperTest method)
test_get_image_by_filename() (vfb_connect.neo.test.neo_tools_tests.NeoQueryWrapperTest method)
test_get_templates() (vfb_connect.neo.test.neo_tools_tests.NeoQueryWrapperTest method)
test_get_term_info() (vfb_connect.neo.test.neo_tools_tests.NeoQueryWrapperTest method)
test_get_terms_by_xref() (vfb_connect.neo.test.neo_tools_tests.NeoQueryWrapperTest method)
test_get_type_term_info() (vfb_connect.neo.test.neo_tools_tests.NeoQueryWrapperTest method)
test_get_vfb_id_by_xref() (vfb_connect.neo.test.neo_tools_tests.NeoQueryWrapperTest method)
test_get_xref_by_vfbid() (vfb_connect.neo.test.neo_tools_tests.NeoQueryWrapperTest method)
test_lookup_gen() (vfb_connect.neo.test.neo_tools_tests.Neo4jConnectTest method)
V
vfb_connect
module
vfb_connect.cross_server_tools
module
vfb_connect.default_servers
module
vfb_connect.neo
module
,
[1]
vfb_connect.neo.neo4j_tools
module
,
[1]
vfb_connect.neo.query_wrapper
module
,
[1]
vfb_connect.neo.test
module
vfb_connect.neo.test.neo_tools_tests
module
vfb_connect.owl
module
vfb_connect.owl.owlery_query_tools
module
,
[1]
vfb_id_2_neuprint_bodyID() (vfb_connect.neo.query_wrapper.QueryWrapper method)
,
[1]
vfb_id_2_xrefs() (in module vfb_connect.neo.query_wrapper.QueryWrapper)
(vfb_connect.neo.query_wrapper.QueryWrapper method)
,
[1]
VfbConnect (class in vfb_connect.cross_server_tools)
X
xref_2_vfb_id() (in module vfb_connect.neo.query_wrapper.QueryWrapper)
(vfb_connect.neo.query_wrapper.QueryWrapper method)
,
[1]
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v: v1.2.15
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