[1]:
!pip install -r ../../../requirements.txt --quiet
!pip install ../../../ --quiet
[notice] A new release of pip is available: 24.0 -> 24.2
[notice] To update, run: pip install --upgrade pip
[notice] A new release of pip is available: 24.0 -> 24.2
[notice] To update, run: pip install --upgrade pip
VFBTerm and VFBTerms Class Demonstration
This notebook demonstrates the usage of the vfb.term and vfb.terms methods for accessing VFB term information. We’ll explore how to create VFBTerm objects, access related terms, images, and use advanced features like lazy loading of parents and manipulating collections of terms with VFBTerms.
[2]:
# Import the VFBConnect class
from vfb_connect import vfb
Welcome to the Virtual Fly Brain API
See the documentation at: https://virtualflybrain.org/docs/tutorials/apis/
Establishing connections to https://VirtualFlyBrain.org services...
Session Established!
Type vfb. and press tab to see available queries. You can run help against any query e.g. help(vfb.get_TermInfo)
Creating and Exploring VFBTerm DataSet Objects
We’ll start by creating a VFBTerm object using the vfb.term method.
[3]:
# Example of creating a VFBTerm object using a term name
vfb_dataset = vfb.term('EM FAFB Engert et al. 2022')
vfb_dataset
[3]:
VFBTerm(term=Term(term=MinimalEntityInfo(name=EM FAFB Engert et al. 2022, short_form=Engert2022), link=https://n2t.net/vfb:Engert2022))
[4]:
vfb_dataset.summary
Loading regions for the first time...
Loading regions for the first time...
[4]:
| ID | Name | Description | URL | Counts | Publications | License | Cross References | |
|---|---|---|---|---|---|---|---|---|
| 0 | Engert2022 | EM FAFB Engert et al. 2022 | FAFB EM reconstructed neurons from Engert et a... | https://n2t.net/vfb:Engert2022 | {'images': 144, 'types': 5} | [Engert et al., 2022, eLife 11: e78110] | CC-BY_4.0 | [https://fafb.catmaid.virtualflybrain.org/?pid... |
[5]:
vfb_dataset.publications
[5]:
[Publication(pub=MinimalEntityInfo(name=Engert et al., 2022, eLife 11: e78110, short_form=FBrf0253662), link=http://flybase.org/reports/FBrf0253662)]
[6]:
vfb_dataset.license
[6]:
Term(term=MinimalEntityInfo(name=CC-BY_4.0, short_form=VFBlicense_CC_BY_4_0), link=https://creativecommons.org/licenses/by/4.0/legalcode)
[7]:
vfb_dataset.counts
[7]:
{'images': 144, 'types': 5}
[8]:
vfb_dataset.xrefs
[8]:
[Xref(link_text=EM FAFB Engert et al. 2022 on VFB CATMAID Adult Brain (FAFB), link=https://fafb.catmaid.virtualflybrain.org/?pid=1&tool=tracingtool&sid0=1&s0=2&active_skeleton_id=17682008, accession=17682008)]
[9]:
vfb_dataset.instances
Loading instances for the first time...
Loading 144 instances for dataset: EM FAFB Engert et al. 2022...
[9]:
VFBTerms(terms=[VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L4#1 (FAFB:10154803), short_form=VFB_001029ja), link=https://n2t.net/vfb:VFB_001029ja)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R4#17 (FAFB:14947934), short_form=VFB_001029l6), link=https://n2t.net/vfb:VFB_001029l6)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R4#6 (FAFB:7471728), short_form=VFB_001029ic), link=https://n2t.net/vfb:VFB_001029ic)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R6#17 (FAFB:11559900), short_form=VFB_001029kj), link=https://n2t.net/vfb:VFB_001029kj)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L4#15 (FAFB:16149178), short_form=VFB_001029ly), link=https://n2t.net/vfb:VFB_001029ly)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L7#9 (FAFB:16149059), short_form=VFB_001029lg), link=https://n2t.net/vfb:VFB_001029lg)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R6#9 (FAFB:9235133), short_form=VFB_001029j7), link=https://n2t.net/vfb:VFB_001029j7)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L1#4 (FAFB:10796200), short_form=VFB_001029jr), link=https://n2t.net/vfb:VFB_001029jr)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R5#4 (FAFB:7479777), short_form=VFB_001029if), link=https://n2t.net/vfb:VFB_001029if)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L1#2 (FAFB:10603489), short_form=VFB_001029jj), link=https://n2t.net/vfb:VFB_001029jj)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L4#14 (FAFB:16149171), short_form=VFB_001029lx), link=https://n2t.net/vfb:VFB_001029lx)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L4#9 (FAFB:16149095), short_form=VFB_001029ll), link=https://n2t.net/vfb:VFB_001029ll)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L2#4 (FAFB:11407091), short_form=VFB_001029jy), link=https://n2t.net/vfb:VFB_001029jy)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R4#12 (FAFB:7793752), short_form=VFB_001029j1), link=https://n2t.net/vfb:VFB_001029j1)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L2#8 (FAFB:16149150), short_form=VFB_001029lu), link=https://n2t.net/vfb:VFB_001029lu)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L4#4 (FAFB:12817585), short_form=VFB_001029kz), link=https://n2t.net/vfb:VFB_001029kz)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R6#23 (FAFB:14947958), short_form=VFB_001029l9), link=https://n2t.net/vfb:VFB_001029l9)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R2#1 (FAFB:7349238), short_form=VFB_001029i5), link=https://n2t.net/vfb:VFB_001029i5)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L1#5 (FAFB:11675069), short_form=VFB_001029ko), link=https://n2t.net/vfb:VFB_001029ko)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R5#16 (FAFB:11967149), short_form=VFB_001029kr), link=https://n2t.net/vfb:VFB_001029kr)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L2#2 (FAFB:10481113), short_form=VFB_001029jg), link=https://n2t.net/vfb:VFB_001029jg)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R2#5 (FAFB:11603401), short_form=VFB_001029kk), link=https://n2t.net/vfb:VFB_001029kk)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L3#4 (FAFB:16149107), short_form=VFB_001029ln), link=https://n2t.net/vfb:VFB_001029ln)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L4#5 (FAFB:14444228), short_form=VFB_001029l3), link=https://n2t.net/vfb:VFB_001029l3)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L4#7 (FAFB:16149083), short_form=VFB_001029lj), link=https://n2t.net/vfb:VFB_001029lj)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L7#10 (FAFB:16149065), short_form=VFB_001029lh), link=https://n2t.net/vfb:VFB_001029lh)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L7#2 (FAFB:10489651), short_form=VFB_001029jh), link=https://n2t.net/vfb:VFB_001029jh)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L1#3 (FAFB:10780425), short_form=VFB_001029jo), link=https://n2t.net/vfb:VFB_001029jo)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R1#4 (FAFB:9348643), short_form=VFB_001029j8), link=https://n2t.net/vfb:VFB_001029j8)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L1#6 (FAFB:16149077), short_form=VFB_001029li), link=https://n2t.net/vfb:VFB_001029li)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R6#11 (FAFB:11559813), short_form=VFB_001029kc), link=https://n2t.net/vfb:VFB_001029kc)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R3#9 (FAFB:11559749), short_form=VFB_001029k7), link=https://n2t.net/vfb:VFB_001029k7)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R5#3 (FAFB:7471829), short_form=VFB_001029id), link=https://n2t.net/vfb:VFB_001029id)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R6#6 (FAFB:7716995), short_form=VFB_001029ik), link=https://n2t.net/vfb:VFB_001029ik)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L7#11 (FAFB:16149158), short_form=VFB_001029lv), link=https://n2t.net/vfb:VFB_001029lv)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R3#1 (FAFB:7723244), short_form=VFB_001029im), link=https://n2t.net/vfb:VFB_001029im)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L4#8 (FAFB:16149089), short_form=VFB_001029lk), link=https://n2t.net/vfb:VFB_001029lk)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R1#12 (FAFB:12001108), short_form=VFB_001029kv), link=https://n2t.net/vfb:VFB_001029kv)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R6#21 (FAFB:14947940), short_form=VFB_001029l7), link=https://n2t.net/vfb:VFB_001029l7)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L7#3 (FAFB:11399580), short_form=VFB_001029jx), link=https://n2t.net/vfb:VFB_001029jx)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R6#12 (FAFB:11559821), short_form=VFB_001029kd), link=https://n2t.net/vfb:VFB_001029kd)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L2#1 (FAFB:10443082), short_form=VFB_001029jf), link=https://n2t.net/vfb:VFB_001029jf)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R6#2 (FAFB:7438474), short_form=VFB_001029i8), link=https://n2t.net/vfb:VFB_001029i8)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R5#15 (FAFB:11635037), short_form=VFB_001029kl), link=https://n2t.net/vfb:VFB_001029kl)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R2#7 (FAFB:11995753), short_form=VFB_001029ku), link=https://n2t.net/vfb:VFB_001029ku)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L7#8 (FAFB:16149029), short_form=VFB_001029lb), link=https://n2t.net/vfb:VFB_001029lb)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R3#6 (FAFB:7796688), short_form=VFB_001029j2), link=https://n2t.net/vfb:VFB_001029j2)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L4#10 (FAFB:16149101), short_form=VFB_001029lm), link=https://n2t.net/vfb:VFB_001029lm)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R5#5 (FAFB:7759742), short_form=VFB_001029ir), link=https://n2t.net/vfb:VFB_001029ir)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L7#5 (FAFB:12215913), short_form=VFB_001029kx), link=https://n2t.net/vfb:VFB_001029kx)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R6#22 (FAFB:14947952), short_form=VFB_001029l8), link=https://n2t.net/vfb:VFB_001029l8)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L7#1 (FAFB:10223339), short_form=VFB_001029jb), link=https://n2t.net/vfb:VFB_001029jb)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L4#12 (FAFB:16149119), short_form=VFB_001029lp), link=https://n2t.net/vfb:VFB_001029lp)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R5#8 (FAFB:9016928), short_form=VFB_001029j6), link=https://n2t.net/vfb:VFB_001029j6)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L3#2 (FAFB:10780407), short_form=VFB_001029jm), link=https://n2t.net/vfb:VFB_001029jm)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R3#10 (FAFB:11559858), short_form=VFB_001029kh), link=https://n2t.net/vfb:VFB_001029kh)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R1#6 (FAFB:11488257), short_form=VFB_001029k1), link=https://n2t.net/vfb:VFB_001029k1)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R6#5 (FAFB:7575588), short_form=VFB_001029ii), link=https://n2t.net/vfb:VFB_001029ii)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R3#12 (FAFB:11987931), short_form=VFB_001029kt), link=https://n2t.net/vfb:VFB_001029kt)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L2#5 (FAFB:16149125), short_form=VFB_001029lq), link=https://n2t.net/vfb:VFB_001029lq)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L7#6 (FAFB:13216531), short_form=VFB_001029l2), link=https://n2t.net/vfb:VFB_001029l2)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R5#12 (FAFB:11559734), short_form=VFB_001029k6), link=https://n2t.net/vfb:VFB_001029k6)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R3#8 (FAFB:8210748), short_form=VFB_001029j5), link=https://n2t.net/vfb:VFB_001029j5)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R1#1 (FAFB:7759923), short_form=VFB_001029is), link=https://n2t.net/vfb:VFB_001029is)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L1#1 (FAFB:10368680), short_form=VFB_001029je), link=https://n2t.net/vfb:VFB_001029je)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R4#14 (FAFB:11206721), short_form=VFB_001029js), link=https://n2t.net/vfb:VFB_001029js)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L2#9 (FAFB:16149164), short_form=VFB_001029lw), link=https://n2t.net/vfb:VFB_001029lw)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R6#4 (FAFB:7485475), short_form=VFB_001029ig), link=https://n2t.net/vfb:VFB_001029ig)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R3#3 (FAFB:7773850), short_form=VFB_001029it), link=https://n2t.net/vfb:VFB_001029it)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R5#13 (FAFB:11559792), short_form=VFB_001029k8), link=https://n2t.net/vfb:VFB_001029k8)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L7#12 (FAFB:16149191), short_form=VFB_001029m0), link=https://n2t.net/vfb:VFB_001029m0)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R6#15 (FAFB:11559846), short_form=VFB_001029kg), link=https://n2t.net/vfb:VFB_001029kg)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L6#5 (FAFB:12226830), short_form=VFB_001029ky), link=https://n2t.net/vfb:VFB_001029ky)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L5#4 (FAFB:16149053), short_form=VFB_001029lf), link=https://n2t.net/vfb:VFB_001029lf)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R6#7 (FAFB:7724239), short_form=VFB_001029in), link=https://n2t.net/vfb:VFB_001029in)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R1#8 (FAFB:11559730), short_form=VFB_001029k5), link=https://n2t.net/vfb:VFB_001029k5)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L2#3 (FAFB:11242644), short_form=VFB_001029ju), link=https://n2t.net/vfb:VFB_001029ju)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R4#1 (FAFB:7349219), short_form=VFB_001029i4), link=https://n2t.net/vfb:VFB_001029i4)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R6#10 (FAFB:11559804), short_form=VFB_001029kb), link=https://n2t.net/vfb:VFB_001029kb)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R1#11 (FAFB:11674090), short_form=VFB_001029kn), link=https://n2t.net/vfb:VFB_001029kn)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R5#9 (FAFB:11206727), short_form=VFB_001029jt), link=https://n2t.net/vfb:VFB_001029jt)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L5#3 (FAFB:16149047), short_form=VFB_001029le), link=https://n2t.net/vfb:VFB_001029le)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L7#4 (FAFB:11461075), short_form=VFB_001029jz), link=https://n2t.net/vfb:VFB_001029jz)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R5#11 (FAFB:11488252), short_form=VFB_001029k0), link=https://n2t.net/vfb:VFB_001029k0)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R1#7 (FAFB:11559706), short_form=VFB_001029k4), link=https://n2t.net/vfb:VFB_001029k4)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R3#2 (FAFB:7759395), short_form=VFB_001029iq), link=https://n2t.net/vfb:VFB_001029iq)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R6#18 (FAFB:12173900), short_form=VFB_001029kw), link=https://n2t.net/vfb:VFB_001029kw)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R4#7 (FAFB:7487871), short_form=VFB_001029ih), link=https://n2t.net/vfb:VFB_001029ih)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R3#7 (FAFB:7802087), short_form=VFB_001029j3), link=https://n2t.net/vfb:VFB_001029j3)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R4#16 (FAFB:14928124), short_form=VFB_001029l4), link=https://n2t.net/vfb:VFB_001029l4)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R6#1 (FAFB:7256298), short_form=VFB_001029i3), link=https://n2t.net/vfb:VFB_001029i3)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R4#3 (FAFB:7432034), short_form=VFB_001029i7), link=https://n2t.net/vfb:VFB_001029i7)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L7#13 (FAFB:16149198), short_form=VFB_001029m1), link=https://n2t.net/vfb:VFB_001029m1)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L4#2 (FAFB:10223392), short_form=VFB_001029jd), link=https://n2t.net/vfb:VFB_001029jd)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R5#14 (FAFB:11559800), short_form=VFB_001029ka), link=https://n2t.net/vfb:VFB_001029ka)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L6#3 (FAFB:11243248), short_form=VFB_001029jv), link=https://n2t.net/vfb:VFB_001029jv)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L3#3 (FAFB:16149041), short_form=VFB_001029ld), link=https://n2t.net/vfb:VFB_001029ld)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R2#2 (FAFB:7757554), short_form=VFB_001029ip), link=https://n2t.net/vfb:VFB_001029ip)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L4#13 (FAFB:16149137), short_form=VFB_001029ls), link=https://n2t.net/vfb:VFB_001029ls)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R1#5 (FAFB:9391836), short_form=VFB_001029j9), link=https://n2t.net/vfb:VFB_001029j9)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R6#8 (FAFB:7881737), short_form=VFB_001029j4), link=https://n2t.net/vfb:VFB_001029j4)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R2#6 (FAFB:11827484), short_form=VFB_001029kp), link=https://n2t.net/vfb:VFB_001029kp)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R4#10 (FAFB:7753061), short_form=VFB_001029io), link=https://n2t.net/vfb:VFB_001029io)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R1#2 (FAFB:7774674), short_form=VFB_001029iw), link=https://n2t.net/vfb:VFB_001029iw)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R5#1 (FAFB:7179579), short_form=VFB_001029i2), link=https://n2t.net/vfb:VFB_001029i2)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R6#14 (FAFB:11559838), short_form=VFB_001029kf), link=https://n2t.net/vfb:VFB_001029kf)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R4#8 (FAFB:7708435), short_form=VFB_001029ij), link=https://n2t.net/vfb:VFB_001029ij)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R5#6 (FAFB:7774393), short_form=VFB_001029iv), link=https://n2t.net/vfb:VFB_001029iv)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L4#3 (FAFB:10780417), short_form=VFB_001029jn), link=https://n2t.net/vfb:VFB_001029jn)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R2#4 (FAFB:11522862), short_form=VFB_001029k3), link=https://n2t.net/vfb:VFB_001029k3)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R6#16 (FAFB:11559865), short_form=VFB_001029ki), link=https://n2t.net/vfb:VFB_001029ki)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R6#3 (FAFB:7474052), short_form=VFB_001029ie), link=https://n2t.net/vfb:VFB_001029ie)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R5#2 (FAFB:7451040), short_form=VFB_001029i9), link=https://n2t.net/vfb:VFB_001029i9)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R5#10 (FAFB:11356628), short_form=VFB_001029jw), link=https://n2t.net/vfb:VFB_001029jw)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R6#19 (FAFB:12880552), short_form=VFB_001029l1), link=https://n2t.net/vfb:VFB_001029l1)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L3#1 (FAFB:10223376), short_form=VFB_001029jc), link=https://n2t.net/vfb:VFB_001029jc)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L5#2 (FAFB:10626457), short_form=VFB_001029jk), link=https://n2t.net/vfb:VFB_001029jk)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L6#4 (FAFB:11984676), short_form=VFB_001029ks), link=https://n2t.net/vfb:VFB_001029ks)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R4#4 (FAFB:7456677), short_form=VFB_001029ia), link=https://n2t.net/vfb:VFB_001029ia)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R4#5 (FAFB:7468835), short_form=VFB_001029ib), link=https://n2t.net/vfb:VFB_001029ib)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R2#3 (FAFB:11488267), short_form=VFB_001029k2), link=https://n2t.net/vfb:VFB_001029k2)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L2#6 (FAFB:16149131), short_form=VFB_001029lr), link=https://n2t.net/vfb:VFB_001029lr)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L7#7 (FAFB:16149023), short_form=VFB_001029la), link=https://n2t.net/vfb:VFB_001029la)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R6#20 (FAFB:14947928), short_form=VFB_001029l5), link=https://n2t.net/vfb:VFB_001029l5)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R6#13 (FAFB:11559827), short_form=VFB_001029ke), link=https://n2t.net/vfb:VFB_001029ke)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R1#3 (FAFB:7789717), short_form=VFB_001029iy), link=https://n2t.net/vfb:VFB_001029iy)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R4#15 (FAFB:12871829), short_form=VFB_001029l0), link=https://n2t.net/vfb:VFB_001029l0)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L4#11 (FAFB:16149113), short_form=VFB_001029lo), link=https://n2t.net/vfb:VFB_001029lo)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R1#10 (FAFB:11647363), short_form=VFB_001029km), link=https://n2t.net/vfb:VFB_001029km)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L2#10 (FAFB:16149184), short_form=VFB_001029lz), link=https://n2t.net/vfb:VFB_001029lz)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L6#1 (FAFB:10780443), short_form=VFB_001029jp), link=https://n2t.net/vfb:VFB_001029jp)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L6#2 (FAFB:10795558), short_form=VFB_001029jq), link=https://n2t.net/vfb:VFB_001029jq)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R3#5 (FAFB:7789762), short_form=VFB_001029j0), link=https://n2t.net/vfb:VFB_001029j0)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R4#11 (FAFB:7774114), short_form=VFB_001029iu), link=https://n2t.net/vfb:VFB_001029iu)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R5#7 (FAFB:7789606), short_form=VFB_001029ix), link=https://n2t.net/vfb:VFB_001029ix)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R3#11 (FAFB:11966486), short_form=VFB_001029kq), link=https://n2t.net/vfb:VFB_001029kq)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R4#13 (FAFB:10742200), short_form=VFB_001029jl), link=https://n2t.net/vfb:VFB_001029jl)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L5#1 (FAFB:10490381), short_form=VFB_001029ji), link=https://n2t.net/vfb:VFB_001029ji)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R3#4 (FAFB:7789757), short_form=VFB_001029iz), link=https://n2t.net/vfb:VFB_001029iz)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R1#9 (FAFB:11559796), short_form=VFB_001029k9), link=https://n2t.net/vfb:VFB_001029k9)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L4#6 (FAFB:16149035), short_form=VFB_001029lc), link=https://n2t.net/vfb:VFB_001029lc)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R4#9 (FAFB:7723218), short_form=VFB_001029il), link=https://n2t.net/vfb:VFB_001029il)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN L2#7 (FAFB:16149144), short_form=VFB_001029lt), link=https://n2t.net/vfb:VFB_001029lt)), VFBTerm(term=Term(term=MinimalEntityInfo(name=GRN R4#2 (FAFB:7349285), short_form=VFB_001029i6), link=https://n2t.net/vfb:VFB_001029i6))])
[10]:
vfb_dataset.instances.get_summaries()
[10]:
| ID | Name | Description | URL | Parents | Cross References | |
|---|---|---|---|---|---|---|
| 0 | VFB_001029ja | GRN L4#1 (FAFB:10154803) | GRN L4#1, FBbt:00110887 | https://n2t.net/vfb:VFB_001029ja | [gustatory receptor neuron of the labellum] | [https://fafb.catmaid.virtualflybrain.org/?pid... |
| 1 | VFB_001029l6 | GRN R4#17 (FAFB:14947934) | GRN R4#17, FBbt:00058156 | https://n2t.net/vfb:VFB_001029l6 | [sugar-sensing neuron of labellar taste bristle] | [https://fafb.catmaid.virtualflybrain.org/?pid... |
| 2 | VFB_001029ic | GRN R4#6 (FAFB:7471728) | GRN R4#6, FBbt:00058156 | https://n2t.net/vfb:VFB_001029ic | [sugar-sensing neuron of labellar taste bristle] | [https://fafb.catmaid.virtualflybrain.org/?pid... |
| 3 | VFB_001029kj | GRN R6#17 (FAFB:11559900) | GRN R6#17, FBbt:00100042 | https://n2t.net/vfb:VFB_001029kj | [water-sensing neuron of labellar taste bristle] | [https://fafb.catmaid.virtualflybrain.org/?pid... |
| 4 | VFB_001029ly | GRN L4#15 (FAFB:16149178) | GRN L4#15, FBbt:00110887 | https://n2t.net/vfb:VFB_001029ly | [gustatory receptor neuron of the labellum] | [https://fafb.catmaid.virtualflybrain.org/?pid... |
| ... | ... | ... | ... | ... | ... | ... |
| 139 | VFB_001029k9 | GRN R1#9 (FAFB:11559796) | GRN R1#9, FBbt:00048152 | https://n2t.net/vfb:VFB_001029k9 | [bitter-sensing neuron of labellar taste bristle] | [https://fafb.catmaid.virtualflybrain.org/?pid... |
| 140 | VFB_001029lc | GRN L4#6 (FAFB:16149035) | GRN L4#6, FBbt:00110887 | https://n2t.net/vfb:VFB_001029lc | [gustatory receptor neuron of the labellum] | [https://fafb.catmaid.virtualflybrain.org/?pid... |
| 141 | VFB_001029il | GRN R4#9 (FAFB:7723218) | GRN R4#9, FBbt:00058156 | https://n2t.net/vfb:VFB_001029il | [sugar-sensing neuron of labellar taste bristle] | [https://fafb.catmaid.virtualflybrain.org/?pid... |
| 142 | VFB_001029lt | GRN L2#7 (FAFB:16149144) | GRN L2#7, FBbt:00048152 | https://n2t.net/vfb:VFB_001029lt | [bitter-sensing neuron of labellar taste bristle] | [https://fafb.catmaid.virtualflybrain.org/?pid... |
| 143 | VFB_001029i6 | GRN R4#2 (FAFB:7349285) | GRN R4#2, FBbt:00058156 | https://n2t.net/vfb:VFB_001029i6 | [sugar-sensing neuron of labellar taste bristle] | [https://fafb.catmaid.virtualflybrain.org/?pid... |
144 rows × 6 columns
[11]:
vfb_dataset.show()
Loading thumbnail for GRN L4#1 (FAFB:10154803)
[12]:
vfb_dataset.open(verbose=True)
Opening https://n2t.net/vfb:Engert2022
[13]:
a=vfb_dataset.instances[50]
print(a.name)
a.channel_images[0].image.show()
GRN R6#22 (FAFB:14947952)
[14]:
vfb_dataset.plot3d()
Enforcing the display template space as JRC2018Unisex from the first skeleton found. Specify a template to avoid this.
Plotting 3D representation of 144 items