Index

B

batch_query() (in module vfb_connect.neo.query_wrapper), [1]

C

chunks() (in module vfb_connect.neo.neo4j_tools), [1] cli_credentials() (in module vfb_connect.neo.neo4j_tools), [1] cli_neofj_connect() (in module vfb_connect.neo.neo4j_tools), [1] commit_csv() (vfb_connect.neo.neo4j_tools.Neo4jConnect method), [1] commit_list() (in module vfb_connect.neo.neo4j_tools.Neo4jConnect) (vfb_connect.neo.neo4j_tools.Neo4jConnect method), [1]

commit_list_in_chunks() (in module vfb_connect.neo.neo4j_tools.Neo4jConnect) (vfb_connect.neo.neo4j_tools.Neo4jConnect method), [1] construct_where_clause() (vfb_connect.neo.neo4j_tools.Neo4jConnect method), [1] cypher_query() (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method)

D

dequote() (in module vfb_connect.cross_server_tools)

dict_cursor() (in module vfb_connect.neo.neo4j_tools), [1]

E

escape_string() (in module vfb_connect.neo.neo4j_tools), [1]

execute_and_process_query() (vfb_connect.neo.neo4j_tools.Neo4jConnect method), [1] execute_and_process_query_with_synonyms() (vfb_connect.neo.neo4j_tools.Neo4jConnect method), [1]

G

gen_short_form() (in module vfb_connect.cross_server_tools) (in module vfb_connect.owl.owlery_query_tools), [1] gen_simple_report() (in module vfb_connect.neo.query_wrapper), [1] generate_lab_colors() (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method) get_anatomical_individual_TermInfo() (in module vfb_connect.neo.query_wrapper.QueryWrapper) (vfb_connect.neo.query_wrapper.QueryWrapper method), [1] get_anatomy_by_type_TermInfo() (vfb_connect.neo.query_wrapper.QueryWrapper method), [1] get_cache_file_path() (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method) get_connected_neurons_by_type() (in module vfb_connect.cross_server_tools.VfbConnect) (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method) get_DataSet_TermInfo() (in module vfb_connect.neo.query_wrapper.QueryWrapper) (vfb_connect.neo.query_wrapper.QueryWrapper method), [1] get_datasets() (in module vfb_connect.neo.query_wrapper.QueryWrapper) (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.neo.query_wrapper.QueryWrapper method), [1] (vfb_connect.VfbConnect method) get_dbs() (in module vfb_connect.neo.query_wrapper.QueryWrapper) (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.neo.query_wrapper.QueryWrapper method), [1] (vfb_connect.VfbConnect method) get_default_servers() (in module vfb_connect.default_servers) get_gene_function_filters() (in module vfb_connect.cross_server_tools.VfbConnect) (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method) get_images() (in module vfb_connect.neo.query_wrapper.QueryWrapper) (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.neo.query_wrapper.QueryWrapper method), [1] (vfb_connect.VfbConnect method) get_images_by_filename() (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.neo.query_wrapper.QueryWrapper method), [1] (vfb_connect.VfbConnect method) get_images_by_type() (in module vfb_connect.cross_server_tools.VfbConnect) (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method) get_instances() (in module vfb_connect.cross_server_tools.VfbConnect) (in module vfb_connect.owl.owlery_query_tools.OWLeryConnect) (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.owl.owlery_query_tools.OWLeryConnect method), [1] (vfb_connect.VfbConnect method) get_instances_by_dataset() (in module vfb_connect.cross_server_tools.VfbConnect) (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method) get_license_TermInfo() (vfb_connect.neo.query_wrapper.QueryWrapper method), [1] get_lookup() (vfb_connect.neo.neo4j_tools.Neo4jConnect method), [1] get_neuron_class_TermInfo() (vfb_connect.neo.query_wrapper.QueryWrapper method), [1] get_neurons_downstream_of() (in module vfb_connect.cross_server_tools.VfbConnect) (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method)

get_neurons_upstream_of() (in module vfb_connect.cross_server_tools.VfbConnect) (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method) get_nt_predictions() (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method) get_nt_receptors_in_downstream_neurons() (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method) get_potential_drivers() (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method) get_pub_TermInfo() (vfb_connect.neo.query_wrapper.QueryWrapper method), [1] get_scRNAseq_expression() (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method) get_scRNAseq_gene_expression() (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method) get_similar_neurons() (in module vfb_connect.cross_server_tools.VfbConnect) (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method) get_split_class_TermInfo() (vfb_connect.neo.query_wrapper.QueryWrapper method), [1] get_subclasses() (in module vfb_connect.cross_server_tools.VfbConnect) (in module vfb_connect.owl.owlery_query_tools.OWLeryConnect) (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.owl.owlery_query_tools.OWLeryConnect method), [1] (vfb_connect.VfbConnect method) get_superclasses() (in module vfb_connect.cross_server_tools.VfbConnect) (in module vfb_connect.owl.owlery_query_tools.OWLeryConnect) (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.owl.owlery_query_tools.OWLeryConnect method), [1] (vfb_connect.VfbConnect method) get_template_TermInfo() (in module vfb_connect.neo.query_wrapper.QueryWrapper) (vfb_connect.neo.query_wrapper.QueryWrapper method), [1] get_templates() (in module vfb_connect.neo.query_wrapper.QueryWrapper) (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.neo.query_wrapper.QueryWrapper method), [1] (vfb_connect.VfbConnect method) get_TermInfo() (in module vfb_connect.neo.query_wrapper.QueryWrapper) (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.neo.query_wrapper.QueryWrapper method), [1] (vfb_connect.VfbConnect method) get_terms_by_region() (in module vfb_connect.cross_server_tools.VfbConnect) (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method) get_terms_by_xref() (in module vfb_connect.neo.query_wrapper.QueryWrapper) (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.neo.query_wrapper.QueryWrapper method), [1] (vfb_connect.VfbConnect method) get_transcriptomic_profile() (in module vfb_connect.cross_server_tools.VfbConnect) (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method) get_type_TermInfo() (in module vfb_connect.neo.query_wrapper.QueryWrapper) (vfb_connect.neo.query_wrapper.QueryWrapper method), [1] get_vfb_link() (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method)

J

json (vfb_connect.cross_server_tools.VfbConnect attribute) (vfb_connect.VfbConnect attribute)

L

labels_2_ids() (vfb_connect.owl.owlery_query_tools.OWLeryConnect method), [1] list_all_edge_props() (vfb_connect.neo.neo4j_tools.Neo4jConnect method), [1] list_all_node_props() (vfb_connect.neo.neo4j_tools.Neo4jConnect method), [1] load_classes() (vfb_connect.neo.neo4j_tools.Neo4jConnect method), [1] load_individuals() (vfb_connect.neo.neo4j_tools.Neo4jConnect method), [1]

load_object_properties() (vfb_connect.neo.neo4j_tools.Neo4jConnect method), [1] lookup_id() (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method) lookup_name() (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method)

M

module vfb_connect vfb_connect.cross_server_tools vfb_connect.default_servers vfb_connect.neo, [1] vfb_connect.neo.neo4j_tools, [1] vfb_connect.neo.query_wrapper, [1] vfb_connect.neo.test vfb_connect.owl vfb_connect.owl.owlery_query_tools, [1]

N

Neo4jConnect (class in vfb_connect.neo.neo4j_tools), [1]

O

owl_instances() (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method) owl_subclasses() (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method)

owl_superclasses() (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method) OWLeryConnect (class in vfb_connect.owl.owlery_query_tools), [1]

P

process_and_add_results() (vfb_connect.neo.neo4j_tools.Neo4jConnect method), [1]

process_results() (vfb_connect.neo.neo4j_tools.Neo4jConnect method), [1]

Q

query() (vfb_connect.owl.owlery_query_tools.OWLeryConnect method), [1]

QueryWrapper (class in vfb_connect.neo.query_wrapper), [1]

R

reload_lookup_cache() (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method)

rest_return_check() (vfb_connect.neo.neo4j_tools.Neo4jConnect method), [1]

S

save_to_cache() (vfb_connect.neo.neo4j_tools.Neo4jConnect method), [1] search() (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method)

setNeoEndpoint() (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method) setOwleryEndpoint() (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method)

T

term() (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method)

terms() (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.VfbConnect method) test_connection() (vfb_connect.neo.neo4j_tools.Neo4jConnect method), [1]

V

vfb_connect module vfb_connect.cross_server_tools module vfb_connect.default_servers module vfb_connect.neo module, [1] vfb_connect.neo.neo4j_tools module, [1] vfb_connect.neo.query_wrapper module, [1]

vfb_connect.neo.test module vfb_connect.owl module vfb_connect.owl.owlery_query_tools module, [1] vfb_id_2_neuprint_bodyID() (vfb_connect.neo.query_wrapper.QueryWrapper method), [1] vfb_id_2_xrefs() (in module vfb_connect.neo.query_wrapper.QueryWrapper) (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.neo.query_wrapper.QueryWrapper method), [1] (vfb_connect.VfbConnect method) VfbConnect (class in vfb_connect) (class in vfb_connect.cross_server_tools)

X

xref_2_vfb_id() (in module vfb_connect.neo.query_wrapper.QueryWrapper) (vfb_connect.cross_server_tools.VfbConnect method) (vfb_connect.neo.query_wrapper.QueryWrapper method), [1] (vfb_connect.VfbConnect method)