{ "cells": [ { "cell_type": "markdown", "metadata": { "cell_id": "00000-d3cab687-8c75-48b6-9862-b1215893d8be", "deepnote_cell_type": "markdown", "tags": [] }, "source": [ "# Discovery\n", "\n", "Required packages: vfb-connect and python-catmaid (pymaid & navis)" ] }, { "cell_type": "code", "execution_count": 1, "metadata": { "cell_id": "00000-8f977ce1-edb3-464f-8d14-37d0507d14dc", "deepnote_cell_type": "code", "deepnote_to_be_reexecuted": false, "execution_millis": 6270, "execution_start": 1614738267818, "output_cleared": false, "source_hash": "d547b677", "tags": [] }, "outputs": [], "source": [ "!pip install -r ../../../requirements.txt --quiet\n", "!pip install ../../../ --quiet\n", "!pip install python-catmaid --quiet" ] }, { "cell_type": "markdown", "metadata": { "cell_id": "00000-79bca113-6b64-4597-ad88-b519aea26aea", "deepnote_cell_type": "markdown", "tags": [] }, "source": [ "### How to find neurons across datasets\n", "\n", "VirtualFlyBrain integrates images and connectomics profiles of neurons from many sources. It classifies and records their properties using a standard, queryable classification ([The Drosophila Anatomy Ontology](https://www.ebi.ac.uk/ols/ontologies/fbbt)). This standardises the names of neuron types across sources, so you don't need to worry about differences in nomenclature uses and supports queries for neurons by their classification. " ] }, { "cell_type": "code", "execution_count": null, "metadata": { "cell_id": "00000-7a8aaee6-8107-4d3e-8262-7fdb8e78edbf", "deepnote_cell_type": "code", "deepnote_to_be_reexecuted": false, "execution_millis": 6091, "execution_start": 1614738274096, "output_cleared": false, "source_hash": "558cc218", "tags": [] }, "outputs": [], "source": [ "# Import libs and initialise API objects\n", "from vfb_connect import vfb\n", "import pandas as pd\n", "import os\n", "\n", "\n", "import pymaid\n", "import navis\n", "\n", "navis.set_pbars(jupyter=False)\n", "pymaid.set_pbars(jupyter=False)\n", "\n", "# Configure VFB for CI/notebook execution performance\n", "vfb._load_limit = int(os.getenv('VFB_LOAD_LIMIT', 50)) # Default to 50 for discovery examples\n", "if os.getenv('VFB_CACHE_ENABLED', 'false').lower() == 'true':\n", " vfb._use_cache = True\n", "\n", "print(f\"VFB load limit set to: {vfb._load_limit}\")\n", "\n", "# Connect to the VFB CATMAID server hosting the FAFB data\n", "rm = pymaid.connect_catmaid(server=\"https://fafb.catmaid.virtualflybrain.org/\", api_token=None, max_threads=10)\n", "\n", "# Test call to see if connection works \n", "print(f'Server is running CATMAID version {rm.catmaid_version}')\n" ] }, { "cell_type": "markdown", "metadata": { "cell_id": "00001-3d466554-95ec-42b9-af26-4d0c9eee3e2c", "deepnote_cell_type": "markdown", "tags": [] }, "source": [ "### Finds neurons by type (classification) across datasets\n", "\n", "We can use the `vfb.get_instances` method in combination with the name of a neuron type on VFB to find individual neurons from multiple sources.\n", "\n", "Use the search tool on [VFB](http://virtualflybrain.org) to find neuron types by name or synonym:\n", "\n", "\n", "\n", "\n", "Use either the full name or the Symbol to query for neurons:" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "cell_id": "00002-0f08c5a1-913b-4a33-be18-d83db2c4809b", "deepnote_cell_type": "code", "deepnote_to_be_reexecuted": false, "execution_millis": 522, "execution_start": 1614738280194, "output_cleared": false, "source_hash": "9a2e97a1", "tags": [] }, "outputs": [ { "data": { "text/html": [ "
\n", "\n", "\n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", "
labelsymbolidtagsdata_sourceaccessionparents_labelparents_idxrefstemplatesdatasetlicense
0DSKMP1A_R (FlyEM-HB:1135837629)DSKMP1A_RVFB_jrchjti2[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1135837629][adult octopaminergic neuron, adult Drosulfaki...[FBbt_00058203, FBbt_00051433][neuprint_JRC_Hemibrain_1point2point1:1135837629, ne...[JRC2018Unisex, JRC_FlyEM_Hemibrain][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
1DSKMP1A(PVM02)_L (FlyEM-HB:1260833150)DSKMP1A(PVM02)_LVFB_jrchjti3[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1260833150][adult Drosulfakinin MP1a neuron, adult octopa...[FBbt_00051433, FBbt_00058203][neuronbridge:1260833150, neuprint_JRC_Hemibra...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
2DSKMP1B_R (FlyEM-HB:1352077058)DSKMP1B_RVFB_jrchjti4[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1352077058][adult octopaminergic neuron, adult Drosulfaki...[FBbt_00058203, FBbt_00051434][neuprint_JRC_Hemibrain_1point2point1:1352077058, ne...[JRC2018Unisex, JRC_FlyEM_Hemibrain][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
3DSKMP1B(PVM02)_L (FlyEM-HB:1011184205)DSKMP1B(PVM02)_LVFB_jrchjti5[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1011184205][adult Drosulfakinin MP1b neuron, adult octopa...[FBbt_00051434, FBbt_00058203][neuprint_JRC_Hemibrain_1point2point1:1011184205, ne...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
4DSKMP3_R (FlyEM-HB:328559607)DSKMP3_RVFB_jrchjti7[Entity, Adult, Anatomy, Cell, Cholinergic, In...[neuprint_JRC_Hemibrain_1point2point1][328559607][adult cholinergic neuron, adult Drosulfakinin...[FBbt_00058205, FBbt_00051432][neuronbridge:328559607, neuprint_JRC_Hemibrai...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
5DSKMP3_R (FlyEM-HB:327937328)DSKMP3_RVFB_jrchjti6[Entity, Adult, Anatomy, Cell, Cholinergic, In...[neuprint_JRC_Hemibrain_1point2point1][327937328][adult cholinergic neuron, adult Drosulfakinin...[FBbt_00058205, FBbt_00051432][neuprint_JRC_Hemibrain_1point2point1:327937328, neu...[JRC2018Unisex, JRC_FlyEM_Hemibrain][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
\n", "
" ], "text/plain": [ " label symbol id \\\n", "0 DSKMP1A_R (FlyEM-HB:1135837629) DSKMP1A_R VFB_jrchjti2 \n", "1 DSKMP1A(PVM02)_L (FlyEM-HB:1260833150) DSKMP1A(PVM02)_L VFB_jrchjti3 \n", "2 DSKMP1B_R (FlyEM-HB:1352077058) DSKMP1B_R VFB_jrchjti4 \n", "3 DSKMP1B(PVM02)_L (FlyEM-HB:1011184205) DSKMP1B(PVM02)_L VFB_jrchjti5 \n", "4 DSKMP3_R (FlyEM-HB:328559607) DSKMP3_R VFB_jrchjti7 \n", "5 DSKMP3_R (FlyEM-HB:327937328) DSKMP3_R VFB_jrchjti6 \n", "\n", " tags \\\n", "0 [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "1 [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "2 [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "3 [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "4 [Entity, Adult, Anatomy, Cell, Cholinergic, In... \n", "5 [Entity, Adult, Anatomy, Cell, Cholinergic, In... \n", "\n", " data_source accession \\\n", "0 [neuprint_JRC_Hemibrain_1point2point1] [1135837629] \n", "1 [neuprint_JRC_Hemibrain_1point2point1] [1260833150] \n", "2 [neuprint_JRC_Hemibrain_1point2point1] [1352077058] \n", "3 [neuprint_JRC_Hemibrain_1point2point1] [1011184205] \n", "4 [neuprint_JRC_Hemibrain_1point2point1] [328559607] \n", "5 [neuprint_JRC_Hemibrain_1point2point1] [327937328] \n", "\n", " parents_label \\\n", "0 [adult octopaminergic neuron, adult Drosulfaki... \n", "1 [adult Drosulfakinin MP1a neuron, adult octopa... \n", "2 [adult octopaminergic neuron, adult Drosulfaki... \n", "3 [adult Drosulfakinin MP1b neuron, adult octopa... \n", "4 [adult cholinergic neuron, adult Drosulfakinin... \n", "5 [adult cholinergic neuron, adult Drosulfakinin... \n", "\n", " parents_id \\\n", "0 [FBbt_00058203, FBbt_00051433] \n", "1 [FBbt_00051433, FBbt_00058203] \n", "2 [FBbt_00058203, FBbt_00051434] \n", "3 [FBbt_00051434, FBbt_00058203] \n", "4 [FBbt_00058205, FBbt_00051432] \n", "5 [FBbt_00058205, FBbt_00051432] \n", "\n", " xrefs \\\n", "0 [neuprint_JRC_Hemibrain_1point2point1:1135837629, ne... \n", "1 [neuronbridge:1260833150, neuprint_JRC_Hemibra... \n", "2 [neuprint_JRC_Hemibrain_1point2point1:1352077058, ne... \n", "3 [neuprint_JRC_Hemibrain_1point2point1:1011184205, ne... \n", "4 [neuronbridge:328559607, neuprint_JRC_Hemibrai... \n", "5 [neuprint_JRC_Hemibrain_1point2point1:327937328, neu... \n", "\n", " templates dataset \\\n", "0 [JRC2018Unisex, JRC_FlyEM_Hemibrain] [Xu2020NeuronsV1point1] \n", "1 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "2 [JRC2018Unisex, JRC_FlyEM_Hemibrain] [Xu2020NeuronsV1point1] \n", "3 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "4 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "5 [JRC2018Unisex, JRC_FlyEM_Hemibrain] [Xu2020NeuronsV1point1] \n", "\n", " license \n", "0 [https://creativecommons.org/licenses/by/4.0/l... \n", "1 [https://creativecommons.org/licenses/by/4.0/l... \n", "2 [https://creativecommons.org/licenses/by/4.0/l... \n", "3 [https://creativecommons.org/licenses/by/4.0/l... \n", "4 [https://creativecommons.org/licenses/by/4.0/l... \n", "5 [https://creativecommons.org/licenses/by/4.0/l... " ] }, "execution_count": 3, "metadata": {}, "output_type": "execute_result" } ], "source": [ "DA3adPN = vfb.get_instances(\"adult Drosulfakinin neuron\", return_dataframe=True)\n", "DA3adPN\n" ] }, { "cell_type": "markdown", "metadata": { "cell_id": "00004-d350500b-89e9-4a83-9add-bb45e436dc1f", "deepnote_cell_type": "markdown", "tags": [] }, "source": [ "### Find neurons by location\n", "\n", "We can use the same method to search for neurons by location, using simple queries." ] }, { "cell_type": "code", "execution_count": null, "metadata": { "cell_id": "00004-dcc17021-330f-4898-877c-cf190a55c379", "deepnote_cell_type": "code", "deepnote_to_be_reexecuted": false, "execution_millis": 1991, "execution_start": 1614738280577, "output_cleared": false, "source_hash": "1e03ca3a", "tags": [] }, "outputs": [ { "data": { "text/html": [ "
\n", "\n", "\n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", "
labelsymbolidtagsdata_sourceaccessionparents_labelparents_idxrefstemplatesdatasetlicense
0v2LN35_R (FlyEM-HB:1733056086)v2LN35_RVFB_jrchk8ew[Entity, Adult, Anatomy, Cell, Cholinergic, In...[neuprint_JRC_Hemibrain_1point2point1][1733056086][cholinergic local interneuron of the adult an...[FBbt_00007403, FBbt_20003766][neuronbridge:1733056086, neuprint_JRC_Hemibra...[JRC2018Unisex, JRC_FlyEM_Hemibrain][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
1lLN2T_a(Tortuous)_R (FlyEM-HB:5813032595)lLN2T_a(Tortuous)_RVFB_jrchk8bd[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][5813032595][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuronbridge:5813032595, neuprint_JRC_Hemibra...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
2lLN2T_d(Tortuous)_R (FlyEM-HB:1667251683)lLN2T_d(Tortuous)_RVFB_jrchk8bp[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1667251683][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuronbridge:1667251683, neuprint_JRC_Hemibra...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
3lLN2P_b(Patchy)_R (FlyEM-HB:1946178096)lLN2P_b(Patchy)_RVFB_jrchk8au[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1946178096][adult local interneuron of the lateral ALl1 n...[FBbt_00007394, FBbt_00007394, FBbt_00007394, ...[neuprint_JRC_Hemibrain_1point2point1:1946178096, ne...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
4lLN2T_a(Tortuous)_R (FlyEM-HB:1762354941)lLN2T_a(Tortuous)_RVFB_jrchk8bg[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1762354941][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuprint_JRC_Hemibrain_1point2point1:1762354941, ne...[JRC2018Unisex, JRC_FlyEM_Hemibrain][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
\n", "
" ], "text/plain": [ " label symbol \\\n", "0 v2LN35_R (FlyEM-HB:1733056086) v2LN35_R \n", "1 lLN2T_a(Tortuous)_R (FlyEM-HB:5813032595) lLN2T_a(Tortuous)_R \n", "2 lLN2T_d(Tortuous)_R (FlyEM-HB:1667251683) lLN2T_d(Tortuous)_R \n", "3 lLN2P_b(Patchy)_R (FlyEM-HB:1946178096) lLN2P_b(Patchy)_R \n", "4 lLN2T_a(Tortuous)_R (FlyEM-HB:1762354941) lLN2T_a(Tortuous)_R \n", "\n", " id tags \\\n", "0 VFB_jrchk8ew [Entity, Adult, Anatomy, Cell, Cholinergic, In... \n", "1 VFB_jrchk8bd [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "2 VFB_jrchk8bp [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "3 VFB_jrchk8au [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "4 VFB_jrchk8bg [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "\n", " data_source accession \\\n", "0 [neuprint_JRC_Hemibrain_1point2point1] [1733056086] \n", "1 [neuprint_JRC_Hemibrain_1point2point1] [5813032595] \n", "2 [neuprint_JRC_Hemibrain_1point2point1] [1667251683] \n", "3 [neuprint_JRC_Hemibrain_1point2point1] [1946178096] \n", "4 [neuprint_JRC_Hemibrain_1point2point1] [1762354941] \n", "\n", " parents_label \\\n", "0 [cholinergic local interneuron of the adult an... \n", "1 [adult serotonergic neuron, adult serotonergic... \n", "2 [adult serotonergic neuron, adult serotonergic... \n", "3 [adult local interneuron of the lateral ALl1 n... \n", "4 [adult serotonergic neuron, adult serotonergic... \n", "\n", " parents_id \\\n", "0 [FBbt_00007403, FBbt_20003766] \n", "1 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "2 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "3 [FBbt_00007394, FBbt_00007394, FBbt_00007394, ... \n", "4 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "\n", " xrefs \\\n", "0 [neuronbridge:1733056086, neuprint_JRC_Hemibra... \n", "1 [neuronbridge:5813032595, neuprint_JRC_Hemibra... \n", "2 [neuronbridge:1667251683, neuprint_JRC_Hemibra... \n", "3 [neuprint_JRC_Hemibrain_1point2point1:1946178096, ne... \n", "4 [neuprint_JRC_Hemibrain_1point2point1:1762354941, ne... \n", "\n", " templates dataset \\\n", "0 [JRC2018Unisex, JRC_FlyEM_Hemibrain] [Xu2020NeuronsV1point1] \n", "1 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "2 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "3 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "4 [JRC2018Unisex, JRC_FlyEM_Hemibrain] [Xu2020NeuronsV1point1] \n", "\n", " license \n", "0 [https://creativecommons.org/licenses/by/4.0/l... \n", "1 [https://creativecommons.org/licenses/by/4.0/l... \n", "2 [https://creativecommons.org/licenses/by/4.0/l... \n", "3 [https://creativecommons.org/licenses/by/4.0/l... \n", "4 [https://creativecommons.org/licenses/by/4.0/l... " ] }, "execution_count": 4, "metadata": {}, "output_type": "execute_result" } ], "source": [ "# Find neurons by location. The following query works across multiple data sources and both sides of the brain. \n", "# Results may be incomplete & may include minor overlap inferred from low synapse counts\n", "\n", "neurons_in_DA3 = vfb.get_instances(\"'neuron' that 'overlaps' some 'antennal lobe glomerulus DA3'\", return_dataframe=True)\n", "neurons_in_DA3[0:5]\n" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "cell_id": "00006-d14e7552-74de-47db-b0df-2cd4880e2d37", "deepnote_cell_type": "code", "deepnote_to_be_reexecuted": false, "execution_millis": 3176, "execution_start": 1614738282570, "output_cleared": false, "source_hash": "1d3a22e2", "tags": [] }, "outputs": [ { "data": { "text/html": [ "
\n", "\n", "\n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", "
labelsymbolidtagsdata_sourceaccessionparents_labelparents_idxrefstemplatesdatasetlicense
0v2LN35_R (FlyEM-HB:1733056086)v2LN35_RVFB_jrchk8ew[Entity, Adult, Anatomy, Cell, Cholinergic, In...[neuprint_JRC_Hemibrain_1point2point1][1733056086][cholinergic local interneuron of the adult an...[FBbt_00007403, FBbt_20003766][neuronbridge:1733056086, neuprint_JRC_Hemibra...[JRC2018Unisex, JRC_FlyEM_Hemibrain][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
1lLN2T_a(Tortuous)_R (FlyEM-HB:5813032595)lLN2T_a(Tortuous)_RVFB_jrchk8bd[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][5813032595][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuronbridge:5813032595, neuprint_JRC_Hemibra...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
2lLN2T_d(Tortuous)_R (FlyEM-HB:1667251683)lLN2T_d(Tortuous)_RVFB_jrchk8bp[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1667251683][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuronbridge:1667251683, neuprint_JRC_Hemibra...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
3lLN2P_b(Patchy)_R (FlyEM-HB:1946178096)lLN2P_b(Patchy)_RVFB_jrchk8au[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1946178096][adult local interneuron of the lateral ALl1 n...[FBbt_00007394, FBbt_00007394, FBbt_00007394, ...[neuprint_JRC_Hemibrain_1point2point1:1946178096, ne...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
4lLN2T_a(Tortuous)_R (FlyEM-HB:1762354941)lLN2T_a(Tortuous)_RVFB_jrchk8bg[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1762354941][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuprint_JRC_Hemibrain_1point2point1:1762354941, ne...[JRC2018Unisex, JRC_FlyEM_Hemibrain][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
5lLN1_c_R (FlyEM-HB:1547454812)lLN1_c_RVFB_jrchk8ai[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1547454812][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuprint_JRC_Hemibrain_1point2point1:1547454812, ne...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
6lLN1_b_R (FlyEM-HB:5813054622)lLN1_b_RVFB_jrchk8a8[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][5813054622][adult antennal lobe local neuron lLN1, adult ...[FBbt_00007395, FBbt_00049526, FBbt_00049526, ...[neuronbridge:5813054622, neuprint_JRC_Hemibra...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
7lLN2T_a(Tortuous)_R (FlyEM-HB:5813056598)lLN2T_a(Tortuous)_RVFB_jrchk8bi[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][5813056598][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuprint_JRC_Hemibrain_1point2point1:5813056598, ne...[JRC2018Unisex, JRC_FlyEM_Hemibrain][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
8lLN2T_e(Tortuous)_R (FlyEM-HB:1640922516)lLN2T_e(Tortuous)_RVFB_jrchk8bs[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1640922516][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuprint_JRC_Hemibrain_1point2point1:1640922516, ne...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
9lLN1_b_R (FlyEM-HB:1642623277)lLN1_b_RVFB_jrchk8ad[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1642623277][adult antennal lobe local neuron lLN1, adult ...[FBbt_00007395, FBbt_00049526, FBbt_00049526, ...[neuprint_JRC_Hemibrain_1point2point1:1642623277, ne...[JRC2018Unisex, JRC_FlyEM_Hemibrain][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
10lLN1_c_R (FlyEM-HB:1702651358)lLN1_c_RVFB_jrchk8aj[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1702651358][adult antennal lobe local neuron lLN1, adult ...[FBbt_00007395, FBbt_00049526, FBbt_00049526, ...[neuprint_JRC_Hemibrain_1point2point1:1702651358, ne...[JRC2018Unisex, JRC_FlyEM_Hemibrain][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
11lLN2F_a(Full)_R (FlyEM-HB:1670287030)lLN2F_a(Full)_RVFB_jrchk8al[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1670287030][adult local interneuron of the lateral ALl1 n...[FBbt_00007394, FBbt_00007394, FBbt_00007394, ...[neuprint_JRC_Hemibrain_1point2point1:1670287030, ne...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
12lLN1_a_R (FlyEM-HB:5813130064)lLN1_a_RVFB_jrchk8a4[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][5813130064][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuronbridge:5813130064, neuprint_JRC_Hemibra...[JRC2018Unisex, JRC_FlyEM_Hemibrain][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
13lLN1_b_R (FlyEM-HB:5813069055)lLN1_b_RVFB_jrchk8aa[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][5813069055][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuprint_JRC_Hemibrain_1point2point1:5813069055, ne...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
14lLN2S(Star)_R (FlyEM-HB:1762359683)lLN2S(Star)_RVFB_jrchk8bc[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1762359683][adult local interneuron of the lateral ALl1 n...[FBbt_00007394, FBbt_00007394, FBbt_00007394, ...[neuronbridge:1762359683, neuprint_JRC_Hemibra...[JRC2018Unisex, JRC_FlyEM_Hemibrain][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
15lLN1_c_R (FlyEM-HB:1578826464)lLN1_c_RVFB_jrchk8ah[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1578826464][adult antennal lobe local neuron lLN1, adult ...[FBbt_00007395, FBbt_00049526, FBbt_00049526, ...[neuronbridge:1578826464, neuprint_JRC_Hemibra...[JRC2018Unisex, JRC_FlyEM_Hemibrain][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
16lLN2F_b(Full)_R (FlyEM-HB:5813024698)lLN2F_b(Full)_RVFB_jrchk8an[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][5813024698][adult local interneuron of the lateral ALl1 n...[FBbt_00007394, FBbt_00007394, FBbt_00007394, ...[neuprint_JRC_Hemibrain_1point2point1:5813024698, ne...[JRC2018Unisex, JRC_FlyEM_Hemibrain][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
17lLN2R_b(Regional)_R (FlyEM-HB:5813076969)lLN2R_b(Regional)_RVFB_jrchk8b6[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][5813076969][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuprint_JRC_Hemibrain_1point2point1:5813076969, ne...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
18lLN1_b_R (FlyEM-HB:5813054777)lLN1_b_RVFB_jrchk8a9[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][5813054777][adult antennal lobe local neuron lLN1, adult ...[FBbt_00007395, FBbt_00049526, FBbt_00049526, ...[neuprint_JRC_Hemibrain_1point2point1:5813054777, ne...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
19lLN2T_b(Tortuous)_R (FlyEM-HB:1640572741)lLN2T_b(Tortuous)_RVFB_jrchk8bl[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1640572741][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuronbridge:1640572741, neuprint_JRC_Hemibra...[JRC2018Unisex, JRC_FlyEM_Hemibrain][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
20lLN1_c_R (FlyEM-HB:5813062199)lLN1_c_RVFB_jrchk8af[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][5813062199][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuprint_JRC_Hemibrain_1point2point1:5813062199, ne...[JRC2018Unisex, JRC_FlyEM_Hemibrain][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
21lLN12a_R (FlyEM-HB:1826445251)lLN12a_RVFB_jrchk89g[Entity, Adult, Anatomy, Cell, Cholinergic, In...[neuprint_JRC_Hemibrain_1point2point1][1826445251][cholinergic local interneuron of the adult an...[FBbt_00007403, FBbt_20003746][neuprint_JRC_Hemibrain_1point2point1:1826445251, ne...[JRC2018Unisex, JRC_FlyEM_Hemibrain][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
22lLN1_c_R (FlyEM-HB:5813047691)lLN1_c_RVFB_jrchk8ae[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][5813047691][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuronbridge:5813047691, neuprint_JRC_Hemibra...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
23lLN2T_a(Tortuous)_R (FlyEM-HB:5813054726)lLN2T_a(Tortuous)_RVFB_jrchk8bh[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][5813054726][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuronbridge:5813054726, neuprint_JRC_Hemibra...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
24lLN2S(Star)_R (FlyEM-HB:1670627928)lLN2S(Star)_RVFB_jrchk8bb[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1670627928][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuronbridge:1670627928, neuprint_JRC_Hemibra...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
25lLN1_b_R (FlyEM-HB:5813078440)lLN1_b_RVFB_jrchk8a7[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][5813078440][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuprint_JRC_Hemibrain_1point2point1:5813078440, ne...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
26lLN2R_b(Regional)_R (FlyEM-HB:1702305987)lLN2R_b(Regional)_RVFB_jrchk8b5[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1702305987][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuprint_JRC_Hemibrain_1point2point1:1702305987, ne...[JRC2018Unisex, JRC_FlyEM_Hemibrain][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
27lLN1_b_R (FlyEM-HB:5813054725)lLN1_b_RVFB_jrchk8ab[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][5813054725][adult antennal lobe local neuron lLN1, adult ...[FBbt_00007395, FBbt_00049526, FBbt_00049526, ...[neuprint_JRC_Hemibrain_1point2point1:5813054725, ne...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
28lLN2S(Star)_R (FlyEM-HB:1732995501)lLN2S(Star)_RVFB_jrchk8ba[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1732995501][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuronbridge:1732995501, neuprint_JRC_Hemibra...[JRC2018Unisex, JRC_FlyEM_Hemibrain][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
29lLN1_b_R (FlyEM-HB:1640887603)lLN1_b_RVFB_jrchk8a6[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1640887603][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuprint_JRC_Hemibrain_1point2point1:1640887603, ne...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
30l2LN18_R (FlyEM-HB:5813054773)l2LN18_RVFB_jrchk891[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][5813054773][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuronbridge:5813054773, neuprint_JRC_Hemibra...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
31lLN10_R (FlyEM-HB:1825789179)lLN10_RVFB_jrchk89b[Entity, Adult, Anatomy, Cell, GABAergic, Indi...[neuprint_JRC_Hemibrain_1point2point1][1825789179][GABAergic local interneuron of the adult ante...[FBbt_00007402, FBbt_00007402, FBbt_00007402, ...[neuprint_JRC_Hemibrain_1point2point1:1825789179, ne...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
32v2LN3b_R (FlyEM-HB:1888199872)v2LN3b_RVFB_jrchk8fg[Entity, Adult, Anatomy, Cell, Cholinergic, In...[neuprint_JRC_Hemibrain_1point2point1][1888199872][cholinergic local interneuron of the adult an...[FBbt_00007403, FBbt_20003755][neuronbridge:1888199872, neuprint_JRC_Hemibra...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
33v2LN3b_R (FlyEM-HB:5813034455)v2LN3b_RVFB_jrchk8ff[Entity, Adult, Anatomy, Cell, Cholinergic, In...[neuprint_JRC_Hemibrain_1point2point1][5813034455][cholinergic local interneuron of the adult an...[FBbt_00007403, FBbt_20003755][neuronbridge:5813034455, neuprint_JRC_Hemibra...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
34lLN2F_b(Full)_R (FlyEM-HB:1640909284)lLN2F_b(Full)_RVFB_jrchk8am[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1640909284][adult local interneuron of the lateral ALl1 n...[FBbt_00007394, FBbt_00007394, FBbt_00007394, ...[neuronbridge:1640909284, neuprint_JRC_Hemibra...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
35lLN2P_a(Patchy)_R (FlyEM-HB:2041621893)lLN2P_a(Patchy)_RVFB_jrchk8ao[Entity, Adult, Anatomy, Cell, GABAergic, Indi...[neuprint_JRC_Hemibrain_1point2point1][2041621893][adult local interneuron of the lateral ALl1 n...[FBbt_00007394, FBbt_00007394, FBbt_00007394, ...[neuronbridge:2041621893, neuprint_JRC_Hemibra...[JRC2018Unisex, JRC_FlyEM_Hemibrain][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
36lLN2S(Star)_R (FlyEM-HB:1702306037)lLN2S(Star)_RVFB_jrchk8b7[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1702306037][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuronbridge:1702306037, neuprint_JRC_Hemibra...[JRC2018Unisex, JRC_FlyEM_Hemibrain][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
37v2LN30_R (FlyEM-HB:1671620613)v2LN30_RVFB_jrchk8e8[Entity, Adult, Anatomy, Cell, GABAergic, Indi...[neuprint_JRC_Hemibrain_1point2point1][1671620613][GABAergic local interneuron of the adult ante...[FBbt_00007402, FBbt_00007402, FBbt_00007402, ...[neuprint_JRC_Hemibrain_1point2point1:1671620613, ne...[JRC2018Unisex, JRC_FlyEM_Hemibrain][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
38lLN11_R (FlyEM-HB:2040301572)lLN11_RVFB_jrchk89d[Entity, Adult, Anatomy, Cell, Cholinergic, In...[neuprint_JRC_Hemibrain_1point2point1][2040301572][cholinergic local interneuron of the adult an...[FBbt_00007403, FBbt_20003745][neuronbridge:2040301572, neuprint_JRC_Hemibra...[JRC2018Unisex, JRC_FlyEM_Hemibrain][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
39lLN1_c_R (FlyEM-HB:1824101645)lLN1_c_RVFB_jrchk8ag[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1824101645][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuronbridge:1824101645, neuprint_JRC_Hemibra...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
40lLN2S(Star)_R (FlyEM-HB:1640922754)lLN2S(Star)_RVFB_jrchk8b8[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1640922754][adult local interneuron of the lateral ALl1 n...[FBbt_00007394, FBbt_00007394, FBbt_00007394, ...[neuprint_JRC_Hemibrain_1point2point1:1640922754, ne...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
41lLN2S(Star)_R (FlyEM-HB:5813069085)lLN2S(Star)_RVFB_jrchk8b9[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][5813069085][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuprint_JRC_Hemibrain_1point2point1:5813069085, ne...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
42lLN2P_c(Patchy)_R (FlyEM-HB:2105086391)lLN2P_c(Patchy)_RVFB_jrchk8b0[Entity, Adult, Anatomy, Cell, GABAergic, Indi...[neuprint_JRC_Hemibrain_1point2point1][2105086391][adult local interneuron of the lateral ALl1 n...[FBbt_00007394, FBbt_00007394, FBbt_00007394, ...[neuprint_JRC_Hemibrain_1point2point1:2105086391, ne...[JRC2018Unisex, JRC_FlyEM_Hemibrain][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
43lLN1_b_R (FlyEM-HB:1610530558)lLN1_b_RVFB_jrchk8ac[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1610530558][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuronbridge:1610530558, neuprint_JRC_Hemibra...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
44lLN2T_e(Tortuous)_R (FlyEM-HB:1699974843)lLN2T_e(Tortuous)_RVFB_jrchk8br[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1699974843][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuprint_JRC_Hemibrain_1point2point1:1699974843, ne...[JRC2018Unisex, JRC_FlyEM_Hemibrain][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
45lLN2T_a(Tortuous)_R (FlyEM-HB:5813055277)lLN2T_a(Tortuous)_RVFB_jrchk8bf[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][5813055277][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuprint_JRC_Hemibrain_1point2point1:5813055277, ne...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
46lLN2F_a(Full)_R (FlyEM-HB:5901218894)lLN2F_a(Full)_RVFB_jrchk8ak[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][5901218894][adult local interneuron of the lateral ALl1 n...[FBbt_00007394, FBbt_00007394, FBbt_00007394, ...[neuprint_JRC_Hemibrain_1point2point1:5901218894, ne...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
47il3LN6_R (FlyEM-HB:5813018460)il3LN6_RVFB_jrchk88v[Entity, Adult, Anatomy, Cell, GABAergic, Indi...[neuprint_JRC_Hemibrain_1point2point1][5813018460][adult serotonergic SE neuron, adult serotoner...[FBbt_00047319, FBbt_00047319, FBbt_00047319, ...[neuprint_JRC_Hemibrain_1point2point1:5813018460, ne...[JRC2018Unisex, JRC_FlyEM_Hemibrain][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
48lLN2T_b(Tortuous)_R (FlyEM-HB:5813034493)lLN2T_b(Tortuous)_RVFB_jrchk8bm[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][5813034493][adult serotonergic neuron, adult serotonergic...[FBbt_00049526, FBbt_00049526, FBbt_00049526, ...[neuronbridge:5813034493, neuprint_JRC_Hemibra...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
49lLN16a_R (FlyEM-HB:1702318692)lLN16a_RVFB_jrchk89t[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1702318692][adult antennal lobe local neuron lLN16A][FBbt_20003751][neuronbridge:1702318692, neuprint_JRC_Hemibra...[JRC2018Unisex, JRC_FlyEM_Hemibrain][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
50lLN11_R (FlyEM-HB:1670278227)lLN11_RVFB_jrchk89e[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1670278227][adult antennal lobe local neuron lLN11][FBbt_20003745][neuprint_JRC_Hemibrain_1point2point1:1670278227, ne...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
51lLN16b_R (FlyEM-HB:1887168462)lLN16b_RVFB_jrchk89w[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1887168462][adult antennal lobe local neuron lLN16B][FBbt_20003752][neuronbridge:1887168462, neuprint_JRC_Hemibra...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
52lLN2T_c(Tortuous)_R (FlyEM-HB:1671292719)lLN2T_c(Tortuous)_RVFB_jrchk8bo[Entity, Adult, Anatomy, Cell, Individual, Ner...[neuprint_JRC_Hemibrain_1point2point1][1671292719][adult antennal lobe local neuron lLN2T][FBbt_00049816][neuronbridge:1671292719, neuprint_JRC_Hemibra...[JRC_FlyEM_Hemibrain, JRC2018Unisex][Xu2020NeuronsV1point1][https://creativecommons.org/licenses/by/4.0/l...
\n", "
" ], "text/plain": [ " label symbol \\\n", "0 v2LN35_R (FlyEM-HB:1733056086) v2LN35_R \n", "1 lLN2T_a(Tortuous)_R (FlyEM-HB:5813032595) lLN2T_a(Tortuous)_R \n", "2 lLN2T_d(Tortuous)_R (FlyEM-HB:1667251683) lLN2T_d(Tortuous)_R \n", "3 lLN2P_b(Patchy)_R (FlyEM-HB:1946178096) lLN2P_b(Patchy)_R \n", "4 lLN2T_a(Tortuous)_R (FlyEM-HB:1762354941) lLN2T_a(Tortuous)_R \n", "5 lLN1_c_R (FlyEM-HB:1547454812) lLN1_c_R \n", "6 lLN1_b_R (FlyEM-HB:5813054622) lLN1_b_R \n", "7 lLN2T_a(Tortuous)_R (FlyEM-HB:5813056598) lLN2T_a(Tortuous)_R \n", "8 lLN2T_e(Tortuous)_R (FlyEM-HB:1640922516) lLN2T_e(Tortuous)_R \n", "9 lLN1_b_R (FlyEM-HB:1642623277) lLN1_b_R \n", "10 lLN1_c_R (FlyEM-HB:1702651358) lLN1_c_R \n", "11 lLN2F_a(Full)_R (FlyEM-HB:1670287030) lLN2F_a(Full)_R \n", "12 lLN1_a_R (FlyEM-HB:5813130064) lLN1_a_R \n", "13 lLN1_b_R (FlyEM-HB:5813069055) lLN1_b_R \n", "14 lLN2S(Star)_R (FlyEM-HB:1762359683) lLN2S(Star)_R \n", "15 lLN1_c_R (FlyEM-HB:1578826464) lLN1_c_R \n", "16 lLN2F_b(Full)_R (FlyEM-HB:5813024698) lLN2F_b(Full)_R \n", "17 lLN2R_b(Regional)_R (FlyEM-HB:5813076969) lLN2R_b(Regional)_R \n", "18 lLN1_b_R (FlyEM-HB:5813054777) lLN1_b_R \n", "19 lLN2T_b(Tortuous)_R (FlyEM-HB:1640572741) lLN2T_b(Tortuous)_R \n", "20 lLN1_c_R (FlyEM-HB:5813062199) lLN1_c_R \n", "21 lLN12a_R (FlyEM-HB:1826445251) lLN12a_R \n", "22 lLN1_c_R (FlyEM-HB:5813047691) lLN1_c_R \n", "23 lLN2T_a(Tortuous)_R (FlyEM-HB:5813054726) lLN2T_a(Tortuous)_R \n", "24 lLN2S(Star)_R (FlyEM-HB:1670627928) lLN2S(Star)_R \n", "25 lLN1_b_R (FlyEM-HB:5813078440) lLN1_b_R \n", "26 lLN2R_b(Regional)_R (FlyEM-HB:1702305987) lLN2R_b(Regional)_R \n", "27 lLN1_b_R (FlyEM-HB:5813054725) lLN1_b_R \n", "28 lLN2S(Star)_R (FlyEM-HB:1732995501) lLN2S(Star)_R \n", "29 lLN1_b_R (FlyEM-HB:1640887603) lLN1_b_R \n", "30 l2LN18_R (FlyEM-HB:5813054773) l2LN18_R \n", "31 lLN10_R (FlyEM-HB:1825789179) lLN10_R \n", "32 v2LN3b_R (FlyEM-HB:1888199872) v2LN3b_R \n", "33 v2LN3b_R (FlyEM-HB:5813034455) v2LN3b_R \n", "34 lLN2F_b(Full)_R (FlyEM-HB:1640909284) lLN2F_b(Full)_R \n", "35 lLN2P_a(Patchy)_R (FlyEM-HB:2041621893) lLN2P_a(Patchy)_R \n", "36 lLN2S(Star)_R (FlyEM-HB:1702306037) lLN2S(Star)_R \n", "37 v2LN30_R (FlyEM-HB:1671620613) v2LN30_R \n", "38 lLN11_R (FlyEM-HB:2040301572) lLN11_R \n", "39 lLN1_c_R (FlyEM-HB:1824101645) lLN1_c_R \n", "40 lLN2S(Star)_R (FlyEM-HB:1640922754) lLN2S(Star)_R \n", "41 lLN2S(Star)_R (FlyEM-HB:5813069085) lLN2S(Star)_R \n", "42 lLN2P_c(Patchy)_R (FlyEM-HB:2105086391) lLN2P_c(Patchy)_R \n", "43 lLN1_b_R (FlyEM-HB:1610530558) lLN1_b_R \n", "44 lLN2T_e(Tortuous)_R (FlyEM-HB:1699974843) lLN2T_e(Tortuous)_R \n", "45 lLN2T_a(Tortuous)_R (FlyEM-HB:5813055277) lLN2T_a(Tortuous)_R \n", "46 lLN2F_a(Full)_R (FlyEM-HB:5901218894) lLN2F_a(Full)_R \n", "47 il3LN6_R (FlyEM-HB:5813018460) il3LN6_R \n", "48 lLN2T_b(Tortuous)_R (FlyEM-HB:5813034493) lLN2T_b(Tortuous)_R \n", "49 lLN16a_R (FlyEM-HB:1702318692) lLN16a_R \n", "50 lLN11_R (FlyEM-HB:1670278227) lLN11_R \n", "51 lLN16b_R (FlyEM-HB:1887168462) lLN16b_R \n", "52 lLN2T_c(Tortuous)_R (FlyEM-HB:1671292719) lLN2T_c(Tortuous)_R \n", "\n", " id tags \\\n", "0 VFB_jrchk8ew [Entity, Adult, Anatomy, Cell, Cholinergic, In... \n", "1 VFB_jrchk8bd [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "2 VFB_jrchk8bp [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "3 VFB_jrchk8au [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "4 VFB_jrchk8bg [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "5 VFB_jrchk8ai [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "6 VFB_jrchk8a8 [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "7 VFB_jrchk8bi [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "8 VFB_jrchk8bs [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "9 VFB_jrchk8ad [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "10 VFB_jrchk8aj [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "11 VFB_jrchk8al [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "12 VFB_jrchk8a4 [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "13 VFB_jrchk8aa [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "14 VFB_jrchk8bc [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "15 VFB_jrchk8ah [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "16 VFB_jrchk8an [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "17 VFB_jrchk8b6 [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "18 VFB_jrchk8a9 [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "19 VFB_jrchk8bl [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "20 VFB_jrchk8af [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "21 VFB_jrchk89g [Entity, Adult, Anatomy, Cell, Cholinergic, In... \n", "22 VFB_jrchk8ae [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "23 VFB_jrchk8bh [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "24 VFB_jrchk8bb [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "25 VFB_jrchk8a7 [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "26 VFB_jrchk8b5 [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "27 VFB_jrchk8ab [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "28 VFB_jrchk8ba [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "29 VFB_jrchk8a6 [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "30 VFB_jrchk891 [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "31 VFB_jrchk89b [Entity, Adult, Anatomy, Cell, GABAergic, Indi... \n", "32 VFB_jrchk8fg [Entity, Adult, Anatomy, Cell, Cholinergic, In... \n", "33 VFB_jrchk8ff [Entity, Adult, Anatomy, Cell, Cholinergic, In... \n", "34 VFB_jrchk8am [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "35 VFB_jrchk8ao [Entity, Adult, Anatomy, Cell, GABAergic, Indi... \n", "36 VFB_jrchk8b7 [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "37 VFB_jrchk8e8 [Entity, Adult, Anatomy, Cell, GABAergic, Indi... \n", "38 VFB_jrchk89d [Entity, Adult, Anatomy, Cell, Cholinergic, In... \n", "39 VFB_jrchk8ag [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "40 VFB_jrchk8b8 [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "41 VFB_jrchk8b9 [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "42 VFB_jrchk8b0 [Entity, Adult, Anatomy, Cell, GABAergic, Indi... \n", "43 VFB_jrchk8ac [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "44 VFB_jrchk8br [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "45 VFB_jrchk8bf [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "46 VFB_jrchk8ak [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "47 VFB_jrchk88v [Entity, Adult, Anatomy, Cell, GABAergic, Indi... \n", "48 VFB_jrchk8bm [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "49 VFB_jrchk89t [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "50 VFB_jrchk89e [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "51 VFB_jrchk89w [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "52 VFB_jrchk8bo [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "\n", " data_source accession \\\n", "0 [neuprint_JRC_Hemibrain_1point2point1] [1733056086] \n", "1 [neuprint_JRC_Hemibrain_1point2point1] [5813032595] \n", "2 [neuprint_JRC_Hemibrain_1point2point1] [1667251683] \n", "3 [neuprint_JRC_Hemibrain_1point2point1] [1946178096] \n", "4 [neuprint_JRC_Hemibrain_1point2point1] [1762354941] \n", "5 [neuprint_JRC_Hemibrain_1point2point1] [1547454812] \n", "6 [neuprint_JRC_Hemibrain_1point2point1] [5813054622] \n", "7 [neuprint_JRC_Hemibrain_1point2point1] [5813056598] \n", "8 [neuprint_JRC_Hemibrain_1point2point1] [1640922516] \n", "9 [neuprint_JRC_Hemibrain_1point2point1] [1642623277] \n", "10 [neuprint_JRC_Hemibrain_1point2point1] [1702651358] \n", "11 [neuprint_JRC_Hemibrain_1point2point1] [1670287030] \n", "12 [neuprint_JRC_Hemibrain_1point2point1] [5813130064] \n", "13 [neuprint_JRC_Hemibrain_1point2point1] [5813069055] \n", "14 [neuprint_JRC_Hemibrain_1point2point1] [1762359683] \n", "15 [neuprint_JRC_Hemibrain_1point2point1] [1578826464] \n", "16 [neuprint_JRC_Hemibrain_1point2point1] [5813024698] \n", "17 [neuprint_JRC_Hemibrain_1point2point1] [5813076969] \n", "18 [neuprint_JRC_Hemibrain_1point2point1] [5813054777] \n", "19 [neuprint_JRC_Hemibrain_1point2point1] [1640572741] \n", "20 [neuprint_JRC_Hemibrain_1point2point1] [5813062199] \n", "21 [neuprint_JRC_Hemibrain_1point2point1] [1826445251] \n", "22 [neuprint_JRC_Hemibrain_1point2point1] [5813047691] \n", "23 [neuprint_JRC_Hemibrain_1point2point1] [5813054726] \n", "24 [neuprint_JRC_Hemibrain_1point2point1] [1670627928] \n", "25 [neuprint_JRC_Hemibrain_1point2point1] [5813078440] \n", "26 [neuprint_JRC_Hemibrain_1point2point1] [1702305987] \n", "27 [neuprint_JRC_Hemibrain_1point2point1] [5813054725] \n", "28 [neuprint_JRC_Hemibrain_1point2point1] [1732995501] \n", "29 [neuprint_JRC_Hemibrain_1point2point1] [1640887603] \n", "30 [neuprint_JRC_Hemibrain_1point2point1] [5813054773] \n", "31 [neuprint_JRC_Hemibrain_1point2point1] [1825789179] \n", "32 [neuprint_JRC_Hemibrain_1point2point1] [1888199872] \n", "33 [neuprint_JRC_Hemibrain_1point2point1] [5813034455] \n", "34 [neuprint_JRC_Hemibrain_1point2point1] [1640909284] \n", "35 [neuprint_JRC_Hemibrain_1point2point1] [2041621893] \n", "36 [neuprint_JRC_Hemibrain_1point2point1] [1702306037] \n", "37 [neuprint_JRC_Hemibrain_1point2point1] [1671620613] \n", "38 [neuprint_JRC_Hemibrain_1point2point1] [2040301572] \n", "39 [neuprint_JRC_Hemibrain_1point2point1] [1824101645] \n", "40 [neuprint_JRC_Hemibrain_1point2point1] [1640922754] \n", "41 [neuprint_JRC_Hemibrain_1point2point1] [5813069085] \n", "42 [neuprint_JRC_Hemibrain_1point2point1] [2105086391] \n", "43 [neuprint_JRC_Hemibrain_1point2point1] [1610530558] \n", "44 [neuprint_JRC_Hemibrain_1point2point1] [1699974843] \n", "45 [neuprint_JRC_Hemibrain_1point2point1] [5813055277] \n", "46 [neuprint_JRC_Hemibrain_1point2point1] [5901218894] \n", "47 [neuprint_JRC_Hemibrain_1point2point1] [5813018460] \n", "48 [neuprint_JRC_Hemibrain_1point2point1] [5813034493] \n", "49 [neuprint_JRC_Hemibrain_1point2point1] [1702318692] \n", "50 [neuprint_JRC_Hemibrain_1point2point1] [1670278227] \n", "51 [neuprint_JRC_Hemibrain_1point2point1] [1887168462] \n", "52 [neuprint_JRC_Hemibrain_1point2point1] [1671292719] \n", "\n", " parents_label \\\n", "0 [cholinergic local interneuron of the adult an... \n", "1 [adult serotonergic neuron, adult serotonergic... \n", "2 [adult serotonergic neuron, adult serotonergic... \n", "3 [adult local interneuron of the lateral ALl1 n... \n", "4 [adult serotonergic neuron, adult serotonergic... \n", "5 [adult serotonergic neuron, adult serotonergic... \n", "6 [adult antennal lobe local neuron lLN1, adult ... \n", "7 [adult serotonergic neuron, adult serotonergic... \n", "8 [adult serotonergic neuron, adult serotonergic... \n", "9 [adult antennal lobe local neuron lLN1, adult ... \n", "10 [adult antennal lobe local neuron lLN1, adult ... \n", "11 [adult local interneuron of the lateral ALl1 n... \n", "12 [adult serotonergic neuron, adult serotonergic... \n", "13 [adult serotonergic neuron, adult serotonergic... \n", "14 [adult local interneuron of the lateral ALl1 n... \n", "15 [adult antennal lobe local neuron lLN1, adult ... \n", "16 [adult local interneuron of the lateral ALl1 n... \n", "17 [adult serotonergic neuron, adult serotonergic... \n", "18 [adult antennal lobe local neuron lLN1, adult ... \n", "19 [adult serotonergic neuron, adult serotonergic... \n", "20 [adult serotonergic neuron, adult serotonergic... \n", "21 [cholinergic local interneuron of the adult an... \n", "22 [adult serotonergic neuron, adult serotonergic... \n", "23 [adult serotonergic neuron, adult serotonergic... \n", "24 [adult serotonergic neuron, adult serotonergic... \n", "25 [adult serotonergic neuron, adult serotonergic... \n", "26 [adult serotonergic neuron, adult serotonergic... \n", "27 [adult antennal lobe local neuron lLN1, adult ... \n", "28 [adult serotonergic neuron, adult serotonergic... \n", "29 [adult serotonergic neuron, adult serotonergic... \n", "30 [adult serotonergic neuron, adult serotonergic... \n", "31 [GABAergic local interneuron of the adult ante... \n", "32 [cholinergic local interneuron of the adult an... \n", "33 [cholinergic local interneuron of the adult an... \n", "34 [adult local interneuron of the lateral ALl1 n... \n", "35 [adult local interneuron of the lateral ALl1 n... \n", "36 [adult serotonergic neuron, adult serotonergic... \n", "37 [GABAergic local interneuron of the adult ante... \n", "38 [cholinergic local interneuron of the adult an... \n", "39 [adult serotonergic neuron, adult serotonergic... \n", "40 [adult local interneuron of the lateral ALl1 n... \n", "41 [adult serotonergic neuron, adult serotonergic... \n", "42 [adult local interneuron of the lateral ALl1 n... \n", "43 [adult serotonergic neuron, adult serotonergic... \n", "44 [adult serotonergic neuron, adult serotonergic... \n", "45 [adult serotonergic neuron, adult serotonergic... \n", "46 [adult local interneuron of the lateral ALl1 n... \n", "47 [adult serotonergic SE neuron, adult serotoner... \n", "48 [adult serotonergic neuron, adult serotonergic... \n", "49 [adult antennal lobe local neuron lLN16A] \n", "50 [adult antennal lobe local neuron lLN11] \n", "51 [adult antennal lobe local neuron lLN16B] \n", "52 [adult antennal lobe local neuron lLN2T] \n", "\n", " parents_id \\\n", "0 [FBbt_00007403, FBbt_20003766] \n", "1 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "2 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "3 [FBbt_00007394, FBbt_00007394, FBbt_00007394, ... \n", "4 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "5 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "6 [FBbt_00007395, FBbt_00049526, FBbt_00049526, ... \n", "7 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "8 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "9 [FBbt_00007395, FBbt_00049526, FBbt_00049526, ... \n", "10 [FBbt_00007395, FBbt_00049526, FBbt_00049526, ... \n", "11 [FBbt_00007394, FBbt_00007394, FBbt_00007394, ... \n", "12 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "13 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "14 [FBbt_00007394, FBbt_00007394, FBbt_00007394, ... \n", "15 [FBbt_00007395, FBbt_00049526, FBbt_00049526, ... \n", "16 [FBbt_00007394, FBbt_00007394, FBbt_00007394, ... \n", "17 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "18 [FBbt_00007395, FBbt_00049526, FBbt_00049526, ... \n", "19 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "20 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "21 [FBbt_00007403, FBbt_20003746] \n", "22 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "23 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "24 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "25 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "26 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "27 [FBbt_00007395, FBbt_00049526, FBbt_00049526, ... \n", "28 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "29 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "30 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "31 [FBbt_00007402, FBbt_00007402, FBbt_00007402, ... \n", "32 [FBbt_00007403, FBbt_20003755] \n", "33 [FBbt_00007403, FBbt_20003755] \n", "34 [FBbt_00007394, FBbt_00007394, FBbt_00007394, ... \n", "35 [FBbt_00007394, FBbt_00007394, FBbt_00007394, ... \n", "36 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "37 [FBbt_00007402, FBbt_00007402, FBbt_00007402, ... \n", "38 [FBbt_00007403, FBbt_20003745] \n", "39 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "40 [FBbt_00007394, FBbt_00007394, FBbt_00007394, ... \n", "41 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "42 [FBbt_00007394, FBbt_00007394, FBbt_00007394, ... \n", "43 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "44 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "45 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "46 [FBbt_00007394, FBbt_00007394, FBbt_00007394, ... \n", "47 [FBbt_00047319, FBbt_00047319, FBbt_00047319, ... \n", "48 [FBbt_00049526, FBbt_00049526, FBbt_00049526, ... \n", "49 [FBbt_20003751] \n", "50 [FBbt_20003745] \n", "51 [FBbt_20003752] \n", "52 [FBbt_00049816] \n", "\n", " xrefs \\\n", "0 [neuronbridge:1733056086, neuprint_JRC_Hemibra... \n", "1 [neuronbridge:5813032595, neuprint_JRC_Hemibra... \n", "2 [neuronbridge:1667251683, neuprint_JRC_Hemibra... \n", "3 [neuprint_JRC_Hemibrain_1point2point1:1946178096, ne... \n", "4 [neuprint_JRC_Hemibrain_1point2point1:1762354941, ne... \n", "5 [neuprint_JRC_Hemibrain_1point2point1:1547454812, ne... \n", "6 [neuronbridge:5813054622, neuprint_JRC_Hemibra... \n", "7 [neuprint_JRC_Hemibrain_1point2point1:5813056598, ne... \n", "8 [neuprint_JRC_Hemibrain_1point2point1:1640922516, ne... \n", "9 [neuprint_JRC_Hemibrain_1point2point1:1642623277, ne... \n", "10 [neuprint_JRC_Hemibrain_1point2point1:1702651358, ne... \n", "11 [neuprint_JRC_Hemibrain_1point2point1:1670287030, ne... \n", "12 [neuronbridge:5813130064, neuprint_JRC_Hemibra... \n", "13 [neuprint_JRC_Hemibrain_1point2point1:5813069055, ne... \n", "14 [neuronbridge:1762359683, neuprint_JRC_Hemibra... \n", "15 [neuronbridge:1578826464, neuprint_JRC_Hemibra... \n", "16 [neuprint_JRC_Hemibrain_1point2point1:5813024698, ne... \n", "17 [neuprint_JRC_Hemibrain_1point2point1:5813076969, ne... \n", "18 [neuprint_JRC_Hemibrain_1point2point1:5813054777, ne... \n", "19 [neuronbridge:1640572741, neuprint_JRC_Hemibra... \n", "20 [neuprint_JRC_Hemibrain_1point2point1:5813062199, ne... \n", "21 [neuprint_JRC_Hemibrain_1point2point1:1826445251, ne... \n", "22 [neuronbridge:5813047691, neuprint_JRC_Hemibra... \n", "23 [neuronbridge:5813054726, neuprint_JRC_Hemibra... \n", "24 [neuronbridge:1670627928, neuprint_JRC_Hemibra... \n", "25 [neuprint_JRC_Hemibrain_1point2point1:5813078440, ne... \n", "26 [neuprint_JRC_Hemibrain_1point2point1:1702305987, ne... \n", "27 [neuprint_JRC_Hemibrain_1point2point1:5813054725, ne... \n", "28 [neuronbridge:1732995501, neuprint_JRC_Hemibra... \n", "29 [neuprint_JRC_Hemibrain_1point2point1:1640887603, ne... \n", "30 [neuronbridge:5813054773, neuprint_JRC_Hemibra... \n", "31 [neuprint_JRC_Hemibrain_1point2point1:1825789179, ne... \n", "32 [neuronbridge:1888199872, neuprint_JRC_Hemibra... \n", "33 [neuronbridge:5813034455, neuprint_JRC_Hemibra... \n", "34 [neuronbridge:1640909284, neuprint_JRC_Hemibra... \n", "35 [neuronbridge:2041621893, neuprint_JRC_Hemibra... \n", "36 [neuronbridge:1702306037, neuprint_JRC_Hemibra... \n", "37 [neuprint_JRC_Hemibrain_1point2point1:1671620613, ne... \n", "38 [neuronbridge:2040301572, neuprint_JRC_Hemibra... \n", "39 [neuronbridge:1824101645, neuprint_JRC_Hemibra... \n", "40 [neuprint_JRC_Hemibrain_1point2point1:1640922754, ne... \n", "41 [neuprint_JRC_Hemibrain_1point2point1:5813069085, ne... \n", "42 [neuprint_JRC_Hemibrain_1point2point1:2105086391, ne... \n", "43 [neuronbridge:1610530558, neuprint_JRC_Hemibra... \n", "44 [neuprint_JRC_Hemibrain_1point2point1:1699974843, ne... \n", "45 [neuprint_JRC_Hemibrain_1point2point1:5813055277, ne... \n", "46 [neuprint_JRC_Hemibrain_1point2point1:5901218894, ne... \n", "47 [neuprint_JRC_Hemibrain_1point2point1:5813018460, ne... \n", "48 [neuronbridge:5813034493, neuprint_JRC_Hemibra... \n", "49 [neuronbridge:1702318692, neuprint_JRC_Hemibra... \n", "50 [neuprint_JRC_Hemibrain_1point2point1:1670278227, ne... \n", "51 [neuronbridge:1887168462, neuprint_JRC_Hemibra... \n", "52 [neuronbridge:1671292719, neuprint_JRC_Hemibra... \n", "\n", " templates dataset \\\n", "0 [JRC2018Unisex, JRC_FlyEM_Hemibrain] [Xu2020NeuronsV1point1] \n", "1 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "2 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "3 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "4 [JRC2018Unisex, JRC_FlyEM_Hemibrain] [Xu2020NeuronsV1point1] \n", "5 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "6 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "7 [JRC2018Unisex, JRC_FlyEM_Hemibrain] [Xu2020NeuronsV1point1] \n", "8 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "9 [JRC2018Unisex, JRC_FlyEM_Hemibrain] [Xu2020NeuronsV1point1] \n", "10 [JRC2018Unisex, JRC_FlyEM_Hemibrain] [Xu2020NeuronsV1point1] \n", "11 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "12 [JRC2018Unisex, JRC_FlyEM_Hemibrain] [Xu2020NeuronsV1point1] \n", "13 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "14 [JRC2018Unisex, JRC_FlyEM_Hemibrain] [Xu2020NeuronsV1point1] \n", "15 [JRC2018Unisex, JRC_FlyEM_Hemibrain] [Xu2020NeuronsV1point1] \n", "16 [JRC2018Unisex, JRC_FlyEM_Hemibrain] [Xu2020NeuronsV1point1] \n", "17 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "18 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "19 [JRC2018Unisex, JRC_FlyEM_Hemibrain] [Xu2020NeuronsV1point1] \n", "20 [JRC2018Unisex, JRC_FlyEM_Hemibrain] [Xu2020NeuronsV1point1] \n", "21 [JRC2018Unisex, JRC_FlyEM_Hemibrain] [Xu2020NeuronsV1point1] \n", "22 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "23 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "24 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "25 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "26 [JRC2018Unisex, JRC_FlyEM_Hemibrain] [Xu2020NeuronsV1point1] \n", "27 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "28 [JRC2018Unisex, JRC_FlyEM_Hemibrain] [Xu2020NeuronsV1point1] \n", "29 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "30 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "31 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "32 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "33 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "34 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "35 [JRC2018Unisex, JRC_FlyEM_Hemibrain] [Xu2020NeuronsV1point1] \n", "36 [JRC2018Unisex, JRC_FlyEM_Hemibrain] [Xu2020NeuronsV1point1] \n", "37 [JRC2018Unisex, JRC_FlyEM_Hemibrain] [Xu2020NeuronsV1point1] \n", "38 [JRC2018Unisex, JRC_FlyEM_Hemibrain] [Xu2020NeuronsV1point1] \n", "39 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "40 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "41 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "42 [JRC2018Unisex, JRC_FlyEM_Hemibrain] [Xu2020NeuronsV1point1] \n", "43 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "44 [JRC2018Unisex, JRC_FlyEM_Hemibrain] [Xu2020NeuronsV1point1] \n", "45 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "46 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "47 [JRC2018Unisex, JRC_FlyEM_Hemibrain] [Xu2020NeuronsV1point1] \n", "48 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "49 [JRC2018Unisex, JRC_FlyEM_Hemibrain] [Xu2020NeuronsV1point1] \n", "50 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "51 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "52 [JRC_FlyEM_Hemibrain, JRC2018Unisex] [Xu2020NeuronsV1point1] \n", "\n", " license \n", "0 [https://creativecommons.org/licenses/by/4.0/l... \n", "1 [https://creativecommons.org/licenses/by/4.0/l... \n", "2 [https://creativecommons.org/licenses/by/4.0/l... \n", "3 [https://creativecommons.org/licenses/by/4.0/l... \n", "4 [https://creativecommons.org/licenses/by/4.0/l... \n", "5 [https://creativecommons.org/licenses/by/4.0/l... \n", "6 [https://creativecommons.org/licenses/by/4.0/l... \n", "7 [https://creativecommons.org/licenses/by/4.0/l... \n", "8 [https://creativecommons.org/licenses/by/4.0/l... \n", "9 [https://creativecommons.org/licenses/by/4.0/l... \n", "10 [https://creativecommons.org/licenses/by/4.0/l... \n", "11 [https://creativecommons.org/licenses/by/4.0/l... \n", "12 [https://creativecommons.org/licenses/by/4.0/l... \n", "13 [https://creativecommons.org/licenses/by/4.0/l... \n", "14 [https://creativecommons.org/licenses/by/4.0/l... \n", "15 [https://creativecommons.org/licenses/by/4.0/l... \n", "16 [https://creativecommons.org/licenses/by/4.0/l... \n", "17 [https://creativecommons.org/licenses/by/4.0/l... \n", "18 [https://creativecommons.org/licenses/by/4.0/l... \n", "19 [https://creativecommons.org/licenses/by/4.0/l... \n", "20 [https://creativecommons.org/licenses/by/4.0/l... \n", "21 [https://creativecommons.org/licenses/by/4.0/l... \n", "22 [https://creativecommons.org/licenses/by/4.0/l... \n", "23 [https://creativecommons.org/licenses/by/4.0/l... \n", "24 [https://creativecommons.org/licenses/by/4.0/l... \n", "25 [https://creativecommons.org/licenses/by/4.0/l... \n", "26 [https://creativecommons.org/licenses/by/4.0/l... \n", "27 [https://creativecommons.org/licenses/by/4.0/l... \n", "28 [https://creativecommons.org/licenses/by/4.0/l... \n", "29 [https://creativecommons.org/licenses/by/4.0/l... \n", "30 [https://creativecommons.org/licenses/by/4.0/l... \n", "31 [https://creativecommons.org/licenses/by/4.0/l... \n", "32 [https://creativecommons.org/licenses/by/4.0/l... \n", "33 [https://creativecommons.org/licenses/by/4.0/l... \n", "34 [https://creativecommons.org/licenses/by/4.0/l... \n", "35 [https://creativecommons.org/licenses/by/4.0/l... \n", "36 [https://creativecommons.org/licenses/by/4.0/l... \n", "37 [https://creativecommons.org/licenses/by/4.0/l... \n", "38 [https://creativecommons.org/licenses/by/4.0/l... \n", "39 [https://creativecommons.org/licenses/by/4.0/l... \n", "40 [https://creativecommons.org/licenses/by/4.0/l... \n", "41 [https://creativecommons.org/licenses/by/4.0/l... \n", "42 [https://creativecommons.org/licenses/by/4.0/l... \n", "43 [https://creativecommons.org/licenses/by/4.0/l... \n", "44 [https://creativecommons.org/licenses/by/4.0/l... \n", "45 [https://creativecommons.org/licenses/by/4.0/l... \n", "46 [https://creativecommons.org/licenses/by/4.0/l... \n", "47 [https://creativecommons.org/licenses/by/4.0/l... \n", "48 [https://creativecommons.org/licenses/by/4.0/l... \n", "49 [https://creativecommons.org/licenses/by/4.0/l... \n", "50 [https://creativecommons.org/licenses/by/4.0/l... \n", "51 [https://creativecommons.org/licenses/by/4.0/l... \n", "52 [https://creativecommons.org/licenses/by/4.0/l... " ] }, "execution_count": 5, "metadata": {}, "output_type": "execute_result" } ], "source": [ "# Find local interneurons (intrinsic neurons) of the AL, overlapping DA3:\n", "\n", "local_in_DA3 = vfb.get_instances(\"'local interneuron of adult antennal lobe' that 'overlaps' some 'antennal lobe glomerulus DA3'\", return_dataframe=True)\n", "local_in_DA3" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "cell_id": "00004-91e5a8af-2f48-4ebb-9c9a-765a7d80a5f1", "deepnote_cell_type": "code", "deepnote_to_be_reexecuted": false, "execution_millis": 1293, "execution_start": 1614738285746, "output_cleared": false, "source_hash": "e41b421a", "tags": [] }, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "INFO : Found 584 neurons matching the search parameters (pymaid)\n" ] }, { "data": { "text/html": [ "<class 'pymaid.core.CatmaidNeuronList'> containing 584 neurons (0.0B)
\n", "\n", "\n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", "
typenameskeleton_idn_nodesn_connectorsn_branchesn_leafscable_lengthsomaunits
0CatmaidNeuronUniglomerular mALT DA1 lPN 57316 2863105 ML2863104NANANANANANA1 nanometer
1CatmaidNeuronUniglomerular mALT DA3 adPN 57350 HG57349NANANANANANA1 nanometer
.................................
582CatmaidNeuronMultiglomerular mlALT vPN VM7d+VM5d+DC4+6 LTS ...4624378NANANANANANA1 nanometer
583CatmaidNeuronUniglomerular mALT DL2d adPN 57342 ML57341NANANANANANA1 nanometer
\n", "
" ], "text/plain": [ " containing 584 neurons (0.0B)\n", " type name \\\n", "0 CatmaidNeuron Uniglomerular mALT DA1 lPN 57316 2863105 ML \n", "1 CatmaidNeuron Uniglomerular mALT DA3 adPN 57350 HG \n", ".. ... ... \n", "582 CatmaidNeuron Multiglomerular mlALT vPN VM7d+VM5d+DC4+6 LTS ... \n", "583 CatmaidNeuron Uniglomerular mALT DL2d adPN 57342 ML \n", "\n", " skeleton_id n_nodes n_connectors n_branches n_leafs cable_length soma \\\n", "0 2863104 NA NA NA NA NA NA \n", "1 57349 NA NA NA NA NA NA \n", ".. ... ... ... ... ... ... ... \n", "582 4624378 NA NA NA NA NA NA \n", "583 57341 NA NA NA NA NA NA \n", "\n", " units \n", "0 1 nanometer \n", "1 1 nanometer \n", ".. ... \n", "582 1 nanometer \n", "583 1 nanometer " ] }, "execution_count": 6, "metadata": {}, "output_type": "execute_result" } ], "source": [ "# Find neurons by dataset/paper - on CATMAID\n", "\n", "bates = pymaid.find_neurons(annotations='Paper: Bates and Schlegel et al 2020')\n", "bates" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "cell_id": "00009-51e5ef7d-4810-4d2d-afce-eb3c6e315810", "deepnote_cell_type": "code", "deepnote_to_be_reexecuted": false, "execution_millis": 2081, "execution_start": 1614738287044, "output_cleared": false, "source_hash": "46eeef09", "tags": [] }, "outputs": [ { "data": { "text/html": [ "
\n", "\n", "\n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", "
labelsymbolidtagsdescriptionminirefFlyBasePMIDDOI
76EM L1 Andrade et al. 2019Andrade2019[Entity, DataSet, Individual, has_image, L1EM][L1 EM reconstructed neurons from Andrade et a...[Andrade et al., 2019, Curr. Biol. 29(3): 412-...[FBrf0241389][30661802][10.1016/j.cub.2018.12.012]
30MBONs and split-GAL4 lines that target them (A...Aso2014[Entity, DataSet, Individual, has_image][][Aso et al., 2014, eLife 3: e04577][FBrf0227179][25535793][10.7554/eLife.04577]
72split-GAL4 lines for dopaminergic neurons (Aso...AsoRubin2016[Entity, DataSet, Individual, has_image][For comparison of the properties of memories ...[Aso and Rubin, 2016, eLife 5: e16135][FBrf0233230][27441388][10.7554/eLife.16135]
165EM FAFB Baltruschat et al 2021Baltruschat2021[Entity, DataSet, Individual, has_image, FAFB][FAFB EM reconstructed neurons from Baltruscha...[Baltruschat et al., 2021, Cell Rep. 34(11): 1...[FBrf0248487][33730583][10.1016/j.celrep.2021.108871]
29EM L1 Barnes et al., 2022Barnes2022[Entity, DataSet, Individual, L1EM][L1 EM reconstructed neurons from Barnes et al...[Barnes et al., 2022, PLoS ONE 17(4): e0266064][FBrf0253082][35377898][10.1371/journal.pone.0266064]
..............................
95EM L1 Zarin, Mark et al. 2019Zarin2019[Entity, DataSet, Individual, has_image, L1EM][L1 EM reconstructed neurons from Zarin, Mark ...[Zarin, Mark et al., 2019][][][10.1101/617977]
93EM FAFB Zhao et al., 2023Zhao2023[Entity, DataSet, Individual, has_image, FAFB][FAFB EM reconstructed neurons from Zhao et al...[Zhao et al., 2023][][][10.1101/2022.12.14.520178]
47EM FAFB Zheng et al 2018Zheng2018[Entity, DataSet, Individual, has_image, FAFB][FAFB EM reconstructed neurons from Zheng et a...[Zheng et al., 2018, Cell 174(3): 730--743.e22][FBrf0239557][30033368][10.1016/j.cell.2018.06.019]
48EM FAFB Zheng et al 2020 (published 2022)Zheng2020[Entity, DataSet, Individual, has_image, FAFB][FAFB EM reconstructed neurons from Zheng et a...[Zheng et al., 2022, Curr. Biol. 32(15): 3334-...[FBrf0254218][35797998][10.1016/j.cub.2022.06.031]
83Larval motor circuit neurons (Zwart2016)Zwart2016[Entity, DataSet, Individual, has_image, L1EM][Zwart et al. 2016][Zwart et al., 2016, Neuron 91(3): 615--628][FBrf0233076][27427461][10.1016/j.neuron.2016.06.031]
\n", "

166 rows × 9 columns

\n", "
" ], "text/plain": [ " label symbol \\\n", "76 EM L1 Andrade et al. 2019 \n", "30 MBONs and split-GAL4 lines that target them (A... \n", "72 split-GAL4 lines for dopaminergic neurons (Aso... \n", "165 EM FAFB Baltruschat et al 2021 \n", "29 EM L1 Barnes et al., 2022 \n", ".. ... ... \n", "95 EM L1 Zarin, Mark et al. 2019 \n", "93 EM FAFB Zhao et al., 2023 \n", "47 EM FAFB Zheng et al 2018 \n", "48 EM FAFB Zheng et al 2020 (published 2022) \n", "83 Larval motor circuit neurons (Zwart2016) \n", "\n", " id tags \\\n", "76 Andrade2019 [Entity, DataSet, Individual, has_image, L1EM] \n", "30 Aso2014 [Entity, DataSet, Individual, has_image] \n", "72 AsoRubin2016 [Entity, DataSet, Individual, has_image] \n", "165 Baltruschat2021 [Entity, DataSet, Individual, has_image, FAFB] \n", "29 Barnes2022 [Entity, DataSet, Individual, L1EM] \n", ".. ... ... \n", "95 Zarin2019 [Entity, DataSet, Individual, has_image, L1EM] \n", "93 Zhao2023 [Entity, DataSet, Individual, has_image, FAFB] \n", "47 Zheng2018 [Entity, DataSet, Individual, has_image, FAFB] \n", "48 Zheng2020 [Entity, DataSet, Individual, has_image, FAFB] \n", "83 Zwart2016 [Entity, DataSet, Individual, has_image, L1EM] \n", "\n", " description \\\n", "76 [L1 EM reconstructed neurons from Andrade et a... \n", "30 [] \n", "72 [For comparison of the properties of memories ... \n", "165 [FAFB EM reconstructed neurons from Baltruscha... \n", "29 [L1 EM reconstructed neurons from Barnes et al... \n", ".. ... \n", "95 [L1 EM reconstructed neurons from Zarin, Mark ... \n", "93 [FAFB EM reconstructed neurons from Zhao et al... \n", "47 [FAFB EM reconstructed neurons from Zheng et a... \n", "48 [FAFB EM reconstructed neurons from Zheng et a... \n", "83 [Zwart et al. 2016] \n", "\n", " miniref FlyBase \\\n", "76 [Andrade et al., 2019, Curr. Biol. 29(3): 412-... [FBrf0241389] \n", "30 [Aso et al., 2014, eLife 3: e04577] [FBrf0227179] \n", "72 [Aso and Rubin, 2016, eLife 5: e16135] [FBrf0233230] \n", "165 [Baltruschat et al., 2021, Cell Rep. 34(11): 1... [FBrf0248487] \n", "29 [Barnes et al., 2022, PLoS ONE 17(4): e0266064] [FBrf0253082] \n", ".. ... ... \n", "95 [Zarin, Mark et al., 2019] [] \n", "93 [Zhao et al., 2023] [] \n", "47 [Zheng et al., 2018, Cell 174(3): 730--743.e22] [FBrf0239557] \n", "48 [Zheng et al., 2022, Curr. Biol. 32(15): 3334-... [FBrf0254218] \n", "83 [Zwart et al., 2016, Neuron 91(3): 615--628] [FBrf0233076] \n", "\n", " PMID DOI \n", "76 [30661802] [10.1016/j.cub.2018.12.012] \n", "30 [25535793] [10.7554/eLife.04577] \n", "72 [27441388] [10.7554/eLife.16135] \n", "165 [33730583] [10.1016/j.celrep.2021.108871] \n", "29 [35377898] [10.1371/journal.pone.0266064] \n", ".. ... ... \n", "95 [] [10.1101/617977] \n", "93 [] [10.1101/2022.12.14.520178] \n", "47 [30033368] [10.1016/j.cell.2018.06.019] \n", "48 [35797998] [10.1016/j.cub.2022.06.031] \n", "83 [27427461] [10.1016/j.neuron.2016.06.031] \n", "\n", "[166 rows x 9 columns]" ] }, "execution_count": 7, "metadata": {}, "output_type": "execute_result" } ], "source": [ "# Inspect what datasets are available on VFB\n", "\n", "ds = vfb.get_datasets()\n", "ds\n", "ds.sort_values(by=['id'])" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "cell_id": "00011-0813a13c-a41c-4399-86ea-af6b1934912b", "deepnote_cell_type": "code", "deepnote_to_be_reexecuted": false, "execution_millis": 429, "execution_start": 1614738319313, "output_cleared": false, "source_hash": "8d995be0", "tags": [] }, "outputs": [ { "data": { "text/html": [ "
\n", "\n", "\n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", "
labelsymbolidtagsparents_labelparents_iddata_sourceaccessionxrefstemplatesdatasetlicense
0OA-VPM3 (FAFB:1329078)VFB_001001dr[Entity, Adult, Anatomy, Cell, Individual, Ner...[octopaminergic VPM3 neuron][FBbt_00110151][catmaid_fafb][1329078][catmaid_fafb:1329078][JRC2018Unisex][Sayin2019][https://creativecommons.org/licenses/by-sa/4....
1OA-VPM4 (FAFB:1191261)VFB_001001dq[Entity, Adult, Anatomy, Cell, Individual, Ner...[octopaminergic VPM4 neuron][FBbt_00110152][catmaid_fafb][1191261][catmaid_fafb:1191261][JRC2018Unisex][Sayin2019][https://creativecommons.org/licenses/by-sa/4....
\n", "
" ], "text/plain": [ " label symbol id \\\n", "0 OA-VPM3 (FAFB:1329078) VFB_001001dr \n", "1 OA-VPM4 (FAFB:1191261) VFB_001001dq \n", "\n", " tags \\\n", "0 [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "1 [Entity, Adult, Anatomy, Cell, Individual, Ner... \n", "\n", " parents_label parents_id data_source accession \\\n", "0 [octopaminergic VPM3 neuron] [FBbt_00110151] [catmaid_fafb] [1329078] \n", "1 [octopaminergic VPM4 neuron] [FBbt_00110152] [catmaid_fafb] [1191261] \n", "\n", " xrefs templates dataset \\\n", "0 [catmaid_fafb:1329078] [JRC2018Unisex] [Sayin2019] \n", "1 [catmaid_fafb:1191261] [JRC2018Unisex] [Sayin2019] \n", "\n", " license \n", "0 [https://creativecommons.org/licenses/by-sa/4.... \n", "1 [https://creativecommons.org/licenses/by-sa/4.... " ] }, "execution_count": 8, "metadata": {}, "output_type": "execute_result" } ], "source": [ "sayin_tab = vfb.get_instances_by_dataset('Sayin2019')\n", "sayin_tab" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "cell_id": "00013-c3cc7d86-9755-48dc-a66e-3a702ebbc015", "deepnote_cell_type": "code", "deepnote_to_be_reexecuted": false, "execution_millis": 279, "execution_start": 1614738289534, "source_hash": "962af1fb", "tags": [] }, "outputs": [ { "data": { "text/html": [ "
\n", "\n", "\n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", "
upstream_neuron_idupstream_neuron_nameweightdownstream_neuron_iddownstream_neuron_nameupstream_classdownstream_classup_data_sourceup_accessiondown_sourcedown_accession
0VFB_jrchjzxxLNd_R (FlyEM-HB:5813021192)25VFB_jrchjthmDNp27_R (FlyEM-HB:1072063538)LNd neurondescending neuron of the posterior brain DNp27...NoneNoneNoneNone
\n", "
" ], "text/plain": [ " upstream_neuron_id upstream_neuron_name weight \\\n", "0 VFB_jrchjzxx LNd_R (FlyEM-HB:5813021192) 25 \n", "\n", " downstream_neuron_id downstream_neuron_name upstream_class \\\n", "0 VFB_jrchjthm DNp27_R (FlyEM-HB:1072063538) LNd neuron \n", "\n", " downstream_class up_data_source \\\n", "0 descending neuron of the posterior brain DNp27... None \n", "\n", " up_accession down_source down_accession \n", "0 None None None " ] }, "execution_count": 9, "metadata": {}, "output_type": "execute_result" } ], "source": [ "vfb.get_connected_neurons_by_type(upstream_type='LNd', downstream_type='adult descending neuron', weight=20)" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "cell_id": "00014-4dfb6b71-235d-4a48-8c0d-9207aa900448", "deepnote_cell_type": "code", "deepnote_to_be_reexecuted": false, "execution_millis": 286, "execution_start": 1614738379854, "source_hash": "d785af5", "tags": [] }, "outputs": [ { "data": { "text/html": [ "
\n", "\n", "\n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", "
upstream_neuron_idupstream_neuron_nameweightdownstream_neuron_iddownstream_neuron_nameupstream_classdownstream_classup_data_sourceup_accessiondown_sourcedown_accession
0VFB_jrchk8e05th s-LNv (FlyEM-HB:511051477)25VFB_jrchjzxxLNd_R (FlyEM-HB:5813021192)adult cholinergic neuron|adult s-LNv neuronLNd neuronNoneNoneNoneNone
1VFB_jrchjzxyLNd_R (FlyEM-HB:5813069648)21VFB_jrchjzxxLNd_R (FlyEM-HB:5813021192)adult cholinergic neuron|LNd neuronLNd neuronNoneNoneNoneNone
2VFB_jrchjtf3DN1pA_R (FlyEM-HB:387166379)30VFB_jrchjzxyLNd_R (FlyEM-HB:5813069648)ventro-contralateral-projecting DN1p neuron|ad...adult cholinergic neuron|LNd neuronNoneNoneNoneNone
3VFB_jrchjtexDN1a_R (FlyEM-HB:264083994)79VFB_jrchjzxyLNd_R (FlyEM-HB:5813069648)DN1a neuronadult cholinergic neuron|LNd neuronNoneNoneNoneNone
4VFB_jrchjtf1DN1pA_R (FlyEM-HB:325529237)30VFB_jrchjzxyLNd_R (FlyEM-HB:5813069648)adult glutamatergic neuron|ventro-contralatera...adult cholinergic neuron|LNd neuronNoneNoneNoneNone
5VFB_jrchjteyDN1a_R (FlyEM-HB:5813022274)75VFB_jrchjzxyLNd_R (FlyEM-HB:5813069648)DN1a neuronadult cholinergic neuron|LNd neuronNoneNoneNoneNone
6VFB_jrchk8e05th s-LNv (FlyEM-HB:511051477)40VFB_jrchjzxyLNd_R (FlyEM-HB:5813069648)adult cholinergic neuron|adult s-LNv neuronadult cholinergic neuron|LNd neuronNoneNoneNoneNone
7VFB_jrchjtf2DN1pA_R (FlyEM-HB:387944118)34VFB_jrchjzxyLNd_R (FlyEM-HB:5813069648)adult glutamatergic neuron|ventro-contralatera...adult cholinergic neuron|LNd neuronNoneNoneNoneNone
8VFB_jrchjtf0DN1pA_R (FlyEM-HB:324846570)37VFB_jrchjzxyLNd_R (FlyEM-HB:5813069648)ventro-contralateral-projecting DN1p neuron|ad...adult cholinergic neuron|LNd neuronNoneNoneNoneNone
9VFB_jrchjzxyLNd_R (FlyEM-HB:5813069648)29VFB_jrchjzxwLNd_R (FlyEM-HB:5813056917)adult cholinergic neuron|LNd neuronadult cholinergic neuron|LNd neuronNoneNoneNoneNone
10VFB_jrchjtf0DN1pA_R (FlyEM-HB:324846570)25VFB_jrchk8e05th s-LNv (FlyEM-HB:511051477)ventro-contralateral-projecting DN1p neuron|ad...adult cholinergic neuron|adult s-LNv neuronNoneNoneNoneNone
11VFB_jrchjtf2DN1pA_R (FlyEM-HB:387944118)22VFB_jrchk8e05th s-LNv (FlyEM-HB:511051477)adult glutamatergic neuron|ventro-contralatera...adult cholinergic neuron|adult s-LNv neuronNoneNoneNoneNone
12VFB_jrchjzxyLNd_R (FlyEM-HB:5813069648)37VFB_jrchk8e05th s-LNv (FlyEM-HB:511051477)adult cholinergic neuron|LNd neuronadult cholinergic neuron|adult s-LNv neuronNoneNoneNoneNone
13VFB_jrchjteyDN1a_R (FlyEM-HB:5813022274)63VFB_jrchk8e05th s-LNv (FlyEM-HB:511051477)DN1a neuronadult cholinergic neuron|adult s-LNv neuronNoneNoneNoneNone
14VFB_jrchjtf1DN1pA_R (FlyEM-HB:325529237)33VFB_jrchk8e05th s-LNv (FlyEM-HB:511051477)adult glutamatergic neuron|ventro-contralatera...adult cholinergic neuron|adult s-LNv neuronNoneNoneNoneNone
15VFB_jrchjtezDN1pA_R (FlyEM-HB:5813010153)25VFB_jrchk8e05th s-LNv (FlyEM-HB:511051477)adult glutamatergic neuron|ventro-contralatera...adult cholinergic neuron|adult s-LNv neuronNoneNoneNoneNone
16VFB_jrchjtexDN1a_R (FlyEM-HB:264083994)55VFB_jrchk8e05th s-LNv (FlyEM-HB:511051477)DN1a neuronadult cholinergic neuron|adult s-LNv neuronNoneNoneNoneNone
17VFB_jrchjtf3DN1pA_R (FlyEM-HB:387166379)25VFB_jrchk8e05th s-LNv (FlyEM-HB:511051477)ventro-contralateral-projecting DN1p neuron|ad...adult cholinergic neuron|adult s-LNv neuronNoneNoneNoneNone
18VFB_jrchk089LPN_R (FlyEM-HB:480029788)43VFB_jrchk08aLPN_R (FlyEM-HB:450034902)adult LP neuron|adult dopaminergic neuronadult LP neuronNoneNoneNoneNone
19VFB_jrchk08aLPN_R (FlyEM-HB:450034902)30VFB_jrchk089LPN_R (FlyEM-HB:480029788)adult LP neuronadult LP neuron|adult dopaminergic neuronNoneNoneNoneNone
\n", "
" ], "text/plain": [ " upstream_neuron_id upstream_neuron_name weight \\\n", "0 VFB_jrchk8e0 5th s-LNv (FlyEM-HB:511051477) 25 \n", "1 VFB_jrchjzxy LNd_R (FlyEM-HB:5813069648) 21 \n", "2 VFB_jrchjtf3 DN1pA_R (FlyEM-HB:387166379) 30 \n", "3 VFB_jrchjtex DN1a_R (FlyEM-HB:264083994) 79 \n", "4 VFB_jrchjtf1 DN1pA_R (FlyEM-HB:325529237) 30 \n", "5 VFB_jrchjtey DN1a_R (FlyEM-HB:5813022274) 75 \n", "6 VFB_jrchk8e0 5th s-LNv (FlyEM-HB:511051477) 40 \n", "7 VFB_jrchjtf2 DN1pA_R (FlyEM-HB:387944118) 34 \n", "8 VFB_jrchjtf0 DN1pA_R (FlyEM-HB:324846570) 37 \n", "9 VFB_jrchjzxy LNd_R (FlyEM-HB:5813069648) 29 \n", "10 VFB_jrchjtf0 DN1pA_R (FlyEM-HB:324846570) 25 \n", "11 VFB_jrchjtf2 DN1pA_R (FlyEM-HB:387944118) 22 \n", "12 VFB_jrchjzxy LNd_R (FlyEM-HB:5813069648) 37 \n", "13 VFB_jrchjtey DN1a_R (FlyEM-HB:5813022274) 63 \n", "14 VFB_jrchjtf1 DN1pA_R (FlyEM-HB:325529237) 33 \n", "15 VFB_jrchjtez DN1pA_R (FlyEM-HB:5813010153) 25 \n", "16 VFB_jrchjtex DN1a_R (FlyEM-HB:264083994) 55 \n", "17 VFB_jrchjtf3 DN1pA_R (FlyEM-HB:387166379) 25 \n", "18 VFB_jrchk089 LPN_R (FlyEM-HB:480029788) 43 \n", "19 VFB_jrchk08a LPN_R (FlyEM-HB:450034902) 30 \n", "\n", " downstream_neuron_id downstream_neuron_name \\\n", "0 VFB_jrchjzxx LNd_R (FlyEM-HB:5813021192) \n", "1 VFB_jrchjzxx LNd_R (FlyEM-HB:5813021192) \n", "2 VFB_jrchjzxy LNd_R (FlyEM-HB:5813069648) \n", "3 VFB_jrchjzxy LNd_R (FlyEM-HB:5813069648) \n", "4 VFB_jrchjzxy LNd_R (FlyEM-HB:5813069648) \n", "5 VFB_jrchjzxy LNd_R (FlyEM-HB:5813069648) \n", "6 VFB_jrchjzxy LNd_R (FlyEM-HB:5813069648) \n", "7 VFB_jrchjzxy LNd_R (FlyEM-HB:5813069648) \n", "8 VFB_jrchjzxy LNd_R (FlyEM-HB:5813069648) \n", "9 VFB_jrchjzxw LNd_R (FlyEM-HB:5813056917) \n", "10 VFB_jrchk8e0 5th s-LNv (FlyEM-HB:511051477) \n", "11 VFB_jrchk8e0 5th s-LNv (FlyEM-HB:511051477) \n", "12 VFB_jrchk8e0 5th s-LNv (FlyEM-HB:511051477) \n", "13 VFB_jrchk8e0 5th s-LNv (FlyEM-HB:511051477) \n", "14 VFB_jrchk8e0 5th s-LNv (FlyEM-HB:511051477) \n", "15 VFB_jrchk8e0 5th s-LNv (FlyEM-HB:511051477) \n", "16 VFB_jrchk8e0 5th s-LNv (FlyEM-HB:511051477) \n", "17 VFB_jrchk8e0 5th s-LNv (FlyEM-HB:511051477) \n", "18 VFB_jrchk08a LPN_R (FlyEM-HB:450034902) \n", "19 VFB_jrchk089 LPN_R (FlyEM-HB:480029788) \n", "\n", " upstream_class \\\n", "0 adult cholinergic neuron|adult s-LNv neuron \n", "1 adult cholinergic neuron|LNd neuron \n", "2 ventro-contralateral-projecting DN1p neuron|ad... \n", "3 DN1a neuron \n", "4 adult glutamatergic neuron|ventro-contralatera... \n", "5 DN1a neuron \n", "6 adult cholinergic neuron|adult s-LNv neuron \n", "7 adult glutamatergic neuron|ventro-contralatera... \n", "8 ventro-contralateral-projecting DN1p neuron|ad... \n", "9 adult cholinergic neuron|LNd neuron \n", "10 ventro-contralateral-projecting DN1p neuron|ad... \n", "11 adult glutamatergic neuron|ventro-contralatera... \n", "12 adult cholinergic neuron|LNd neuron \n", "13 DN1a neuron \n", "14 adult glutamatergic neuron|ventro-contralatera... \n", "15 adult glutamatergic neuron|ventro-contralatera... \n", "16 DN1a neuron \n", "17 ventro-contralateral-projecting DN1p neuron|ad... \n", "18 adult LP neuron|adult dopaminergic neuron \n", "19 adult LP neuron \n", "\n", " downstream_class up_data_source up_accession \\\n", "0 LNd neuron None None \n", "1 LNd neuron None None \n", "2 adult cholinergic neuron|LNd neuron None None \n", "3 adult cholinergic neuron|LNd neuron None None \n", "4 adult cholinergic neuron|LNd neuron None None \n", "5 adult cholinergic neuron|LNd neuron None None \n", "6 adult cholinergic neuron|LNd neuron None None \n", "7 adult cholinergic neuron|LNd neuron None None \n", "8 adult cholinergic neuron|LNd neuron None None \n", "9 adult cholinergic neuron|LNd neuron None None \n", "10 adult cholinergic neuron|adult s-LNv neuron None None \n", "11 adult cholinergic neuron|adult s-LNv neuron None None \n", "12 adult cholinergic neuron|adult s-LNv neuron None None \n", "13 adult cholinergic neuron|adult s-LNv neuron None None \n", "14 adult cholinergic neuron|adult s-LNv neuron None None \n", "15 adult cholinergic neuron|adult s-LNv neuron None None \n", "16 adult cholinergic neuron|adult s-LNv neuron None None \n", "17 adult cholinergic neuron|adult s-LNv neuron None None \n", "18 adult LP neuron None None \n", "19 adult LP neuron|adult dopaminergic neuron None None \n", "\n", " down_source down_accession \n", "0 None None \n", "1 None None \n", "2 None None \n", "3 None None \n", "4 None None \n", "5 None None \n", "6 None None \n", "7 None None \n", "8 None None \n", "9 None None \n", "10 None None \n", "11 None None \n", "12 None None \n", "13 None None \n", "14 None None \n", "15 None None \n", "16 None None \n", "17 None None \n", "18 None None \n", "19 None None " ] }, "execution_count": 10, "metadata": {}, "output_type": "execute_result" } ], "source": [ "# Intra pacemaker neuron neuron connections\n", "\n", "vfb.get_connected_neurons_by_type(upstream_type='pacemaker neuron', downstream_type='pacemaker neuron', weight=20)" ] }, { "cell_type": "code", "execution_count": null, "metadata": { "cell_id": "00014-805b86fa-55b8-4d49-a340-595932ba0c9a", "deepnote_cell_type": "code", "deepnote_to_be_reexecuted": false, "execution_millis": 80982, "execution_start": 1614738620354, "source_hash": "6ba8826f", "tags": [] }, "outputs": [ { "data": { "text/html": [ "
\n", "\n", "\n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", " \n", "
upstream_neuron_idupstream_neuron_nameweightdownstream_neuron_iddownstream_neuron_nameupstream_classdownstream_classup_data_sourceup_accessiondown_sourcedown_accession
0VFB_jrchjrmuAVLP053_R (FlyEM-HB:5813021533)124VFB_jrchjti2DSKMP1A_R (FlyEM-HB:1135837629)adult anterior ventrolateral protocerebrum neu...adult octopaminergic neuron|adult Drosulfakini...NoneNoneNoneNone
1VFB_jrchjs4yAVLP340_R (FlyEM-HB:1260949492)29VFB_jrchjti2DSKMP1A_R (FlyEM-HB:1135837629)adult anterior ventrolateral protocerebrum neu...adult octopaminergic neuron|adult Drosulfakini...NoneNoneNoneNone
2VFB_jrchk5inSLP130_R (FlyEM-HB:456847100)94VFB_jrchjti2DSKMP1A_R (FlyEM-HB:1135837629)adult superior lateral protocerebrum neuron 130adult octopaminergic neuron|adult Drosulfakini...NoneNoneNoneNone
3VFB_jrchjsi7AVLP580_L (FlyEM-HB:1097642017)91VFB_jrchjti2DSKMP1A_R (FlyEM-HB:1135837629)adult glutamatergic neuron|adult anterior vent...adult octopaminergic neuron|adult Drosulfakini...NoneNoneNoneNone
4VFB_jrchjsi9AVLP580_L (FlyEM-HB:5812991151)64VFB_jrchjti2DSKMP1A_R (FlyEM-HB:1135837629)adult anterior ventrolateral protocerebrum neu...adult octopaminergic neuron|adult Drosulfakini...NoneNoneNoneNone
....................................
56VFB_jrchk5zhSLP384_R (FlyEM-HB:482702027)20VFB_jrchjti6DSKMP3_R (FlyEM-HB:327937328)adult superior lateral protocerebrum neuron 384adult cholinergic neuron|adult Drosulfakinin M...NoneNoneNoneNone
57VFB_jrchk5chSLP031_R (FlyEM-HB:5813026615)59VFB_jrchjti6DSKMP3_R (FlyEM-HB:327937328)adult superior lateral protocerebrum neuron 031adult cholinergic neuron|adult Drosulfakinin M...NoneNoneNoneNone
58VFB_jrchk0fdMBON23(a2sp)_R (FlyEM-HB:423382015)21VFB_jrchjti6DSKMP3_R (FlyEM-HB:327937328)mushroom body output neuron 23|adult cholinerg...adult cholinergic neuron|adult Drosulfakinin M...NoneNoneNoneNone
59VFB_jrchjz3eLHAV6h1_R (FlyEM-HB:672960748)27VFB_jrchjti6DSKMP3_R (FlyEM-HB:327937328)adult glutamatergic neuron|adult lateral horn ...adult cholinergic neuron|adult Drosulfakinin M...NoneNoneNoneNone
60VFB_jrchjyu7LHAV3j1_R (FlyEM-HB:297851977)24VFB_jrchjti6DSKMP3_R (FlyEM-HB:327937328)adult lateral horn AV3j1 neuron|adult choliner...adult cholinergic neuron|adult Drosulfakinin M...NoneNoneNoneNone
\n", "

61 rows × 11 columns

\n", "
" ], "text/plain": [ " upstream_neuron_id upstream_neuron_name weight \\\n", "0 VFB_jrchjrmu AVLP053_R (FlyEM-HB:5813021533) 124 \n", "1 VFB_jrchjs4y AVLP340_R (FlyEM-HB:1260949492) 29 \n", "2 VFB_jrchk5in SLP130_R (FlyEM-HB:456847100) 94 \n", "3 VFB_jrchjsi7 AVLP580_L (FlyEM-HB:1097642017) 91 \n", "4 VFB_jrchjsi9 AVLP580_L (FlyEM-HB:5812991151) 64 \n", ".. ... ... ... \n", "56 VFB_jrchk5zh SLP384_R (FlyEM-HB:482702027) 20 \n", "57 VFB_jrchk5ch SLP031_R (FlyEM-HB:5813026615) 59 \n", "58 VFB_jrchk0fd MBON23(a2sp)_R (FlyEM-HB:423382015) 21 \n", "59 VFB_jrchjz3e LHAV6h1_R (FlyEM-HB:672960748) 27 \n", "60 VFB_jrchjyu7 LHAV3j1_R (FlyEM-HB:297851977) 24 \n", "\n", " downstream_neuron_id downstream_neuron_name \\\n", "0 VFB_jrchjti2 DSKMP1A_R (FlyEM-HB:1135837629) \n", "1 VFB_jrchjti2 DSKMP1A_R (FlyEM-HB:1135837629) \n", "2 VFB_jrchjti2 DSKMP1A_R (FlyEM-HB:1135837629) \n", "3 VFB_jrchjti2 DSKMP1A_R (FlyEM-HB:1135837629) \n", "4 VFB_jrchjti2 DSKMP1A_R (FlyEM-HB:1135837629) \n", ".. ... ... \n", "56 VFB_jrchjti6 DSKMP3_R (FlyEM-HB:327937328) \n", "57 VFB_jrchjti6 DSKMP3_R (FlyEM-HB:327937328) \n", "58 VFB_jrchjti6 DSKMP3_R (FlyEM-HB:327937328) \n", "59 VFB_jrchjti6 DSKMP3_R (FlyEM-HB:327937328) \n", "60 VFB_jrchjti6 DSKMP3_R (FlyEM-HB:327937328) \n", "\n", " upstream_class \\\n", "0 adult anterior ventrolateral protocerebrum neu... \n", "1 adult anterior ventrolateral protocerebrum neu... \n", "2 adult superior lateral protocerebrum neuron 130 \n", "3 adult glutamatergic neuron|adult anterior vent... \n", "4 adult anterior ventrolateral protocerebrum neu... \n", ".. ... \n", "56 adult superior lateral protocerebrum neuron 384 \n", "57 adult superior lateral protocerebrum neuron 031 \n", "58 mushroom body output neuron 23|adult cholinerg... \n", "59 adult glutamatergic neuron|adult lateral horn ... \n", "60 adult lateral horn AV3j1 neuron|adult choliner... \n", "\n", " downstream_class up_data_source \\\n", "0 adult octopaminergic neuron|adult Drosulfakini... None \n", "1 adult octopaminergic neuron|adult Drosulfakini... None \n", "2 adult octopaminergic neuron|adult Drosulfakini... None \n", "3 adult octopaminergic neuron|adult Drosulfakini... None \n", "4 adult octopaminergic neuron|adult Drosulfakini... None \n", ".. ... ... \n", "56 adult cholinergic neuron|adult Drosulfakinin M... None \n", "57 adult cholinergic neuron|adult Drosulfakinin M... None \n", "58 adult cholinergic neuron|adult Drosulfakinin M... None \n", "59 adult cholinergic neuron|adult Drosulfakinin M... None \n", "60 adult cholinergic neuron|adult Drosulfakinin M... None \n", "\n", " up_accession down_source down_accession \n", "0 None None None \n", "1 None None None \n", "2 None None None \n", "3 None None None \n", "4 None None None \n", ".. ... ... ... \n", "56 None None None \n", "57 None None None \n", "58 None None None \n", "59 None None None \n", "60 None None None \n", "\n", "[61 rows x 11 columns]" ] }, "execution_count": 11, "metadata": {}, "output_type": "execute_result" } ], "source": [ "\n", "vfb.get_connected_neurons_by_type(upstream_type='adult neuron', downstream_type='adult Drosulfakinin neuron', weight=20)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "### Transcriptomics Queries\n", "\n", "# Finding single cell transcriptomics data for a given cell type" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ " cell_type cell_type_id sample_sex \\\n", "0 adult antennal olfactory receptor neuron FBbt_00007352 female organism \n", "1 adult antennal olfactory receptor neuron FBbt_00007352 male organism \n", "2 adult antennal olfactory receptor neuron FBbt_00007352 None \n", "3 adult antennal olfactory receptor neuron FBbt_00007352 female organism \n", "4 adult antennal olfactory receptor neuron FBbt_00007352 male organism \n", "\n", " sample_tissue \\\n", "0 [antenna, adult corpus cardiacum, antenna, adu... \n", "1 [wing, haltere, adult, adult pars intercerebra... \n", "2 [antenna, proboscis, male reproductive system,... \n", "3 [antenna, adult corpus cardiacum, antenna, adu... \n", "4 [wing, haltere, adult, adult pars intercerebra... \n", "\n", " ref gene gene_id \\\n", "0 Li et al., 2022, Science 375(6584): eabk2432 14-3-3ε FBgn0020238 \n", "1 Li et al., 2022, Science 375(6584): eabk2432 14-3-3ε FBgn0020238 \n", "2 Li et al., 2022, Science 375(6584): eabk2432 14-3-3ε FBgn0020238 \n", "3 Li et al., 2022, Science 375(6584): eabk2432 14-3-3ζ FBgn0004907 \n", "4 Li et al., 2022, Science 375(6584): eabk2432 14-3-3ζ FBgn0004907 \n", "\n", " function extent level \n", "0 [] 0.609756 1395.2687 \n", "1 [] 0.625000 1317.0752 \n", "2 [] 0.618605 1340.0747 \n", "3 [] 0.725610 1721.6161 \n", "4 [] 0.640625 1561.3594 \n" ] } ], "source": [ "\n", "profile = vfb.get_transcriptomic_profile(cell_type = 'adult olfactory receptor neuron')\n", "print(profile.head())" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "These results can be filtered by gene function - first find available gene functions" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "['Acetylcholine_receptor', 'Calcium_binding', 'Carbohydrate_binding', 'Chaperone', 'Cytoskeleton_binding', 'DNA_binding', 'Dopamine_receptor', 'Enzyme', 'GABA_receptor', 'GPCR', 'Glutamate_receptor', 'Gustatory_receptor', 'Histamine_receptor', 'Hormone', 'Ion_channel', 'Ligand', 'Lipid_binding', 'Mechanosensory_ion_channel', 'Metal_ion_binding', 'Neuropeptide', 'Neurotransmitter_receptor', 'Octopamine_receptor', 'Odorant_binding', 'Olfactory_receptor', 'Peptide_or_protein_hormone_receptor', 'Photoreceptor', 'RNA_binding', 'Receptor', 'Regulator', 'Serotonin_receptor', 'Small_molecule_binding', 'Structural_molecule', 'Thermosensory_ion_channel', 'Transcription_factor', 'Transporter', 'Tyramine_receptor']\n" ] } ], "source": [ "functions = vfb.get_gene_function_filters()\n", "print(functions)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Then run transcriptomics query speicfying a gene function to filter on" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ " cell_type cell_type_id sample_sex \\\n", "0 adult antennal olfactory receptor neuron FBbt_00007352 female organism \n", "1 adult antennal olfactory receptor neuron FBbt_00007352 male organism \n", "2 adult antennal olfactory receptor neuron FBbt_00007352 None \n", "3 adult olfactory receptor neuron FBbt_00007386 female organism \n", "4 adult olfactory receptor neuron FBbt_00007386 male organism \n", "\n", " sample_tissue \\\n", "0 [antenna, adult corpus cardiacum, antenna, adu... \n", "1 [wing, haltere, adult, adult pars intercerebra... \n", "2 [antenna, proboscis, male reproductive system,... \n", "3 [adult head] \n", "4 [adult head] \n", "\n", " ref gene gene_id \\\n", "0 Li et al., 2022, Science 375(6584): eabk2432 Orco FBgn0037324 \n", "1 Li et al., 2022, Science 375(6584): eabk2432 Orco FBgn0037324 \n", "2 Li et al., 2022, Science 375(6584): eabk2432 Orco FBgn0037324 \n", "3 Li et al., 2022, Science 375(6584): eabk2432 CG42260 FBgn0259145 \n", "4 Li et al., 2022, Science 375(6584): eabk2432 CG42260 FBgn0259145 \n", "\n", " function extent level \n", "0 [Olfactory_receptor, Receptor, Ion_channel, Od... 0.469512 1800.4366 \n", "1 [Olfactory_receptor, Receptor, Ion_channel, Od... 0.432292 1710.8816 \n", "2 [Olfactory_receptor, Receptor, Ion_channel, Od... 0.479070 1633.1283 \n", "3 [Small_molecule_binding, Olfactory_receptor, R... 0.201531 1282.2848 \n", "4 [Small_molecule_binding, Olfactory_receptor, R... 0.201299 1171.4191 \n" ] } ], "source": [ "filtered_profile = vfb.get_transcriptomic_profile(cell_type = 'adult olfactory receptor neuron', gene_type='Olfactory_receptor')\n", "print(filtered_profile.head())" ] } ], "metadata": { "deepnote": {}, "deepnote_execution_queue": [], "deepnote_notebook_id": "718b5c51-e3e5-4906-8b47-3ce8982d56ba", "kernelspec": { "display_name": "Python 3", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.10.9" }, "orig_nbformat": 2 }, "nbformat": 4, "nbformat_minor": 2 }